YRC Public Data Repository - Protein Structure Prediction

Protein:	PSR2
Organism:	Saccharomyces cerevisiae
Length:	397 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PSR2.

Description	E-value	Query Range	Subject Range
gi\|207343198 - gi\|207343198\|gb\|EDZ70734.1\| YLR019Wp-like protein [Saccharomyces cerevisiae AWRI1631] gi\|151941187 - gi\|151941187\|gb\|EDN59565.1\| protein phosphatase [Saccharomyces cerevisiae YJM789] PSR2 - Functionally redundant Psr1p homolog, a plasma membrane phosphatase involved in the general stress r... PSR2_YEAST - Probable phosphatase PSR2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=PSR2 PE=1 SV=1	0.0	[1..397]	[1..397]
CTDSL_CHICK - CTD small phosphatase-like protein OS=Gallus gallus GN=NFI1 PE=2 SV=2 gi\|542165764\|ref... - PREDICTED: CTD small phosphatase-like protein isoform X2 [Zonotrichia albicollis] gi\|224044589 - gi\|224044589\|ref\|XP_002196491.1\| PREDICTED: CTD (carboxy-terminal domain, RNA polymerase II, polypep...	1.0E-84	[114..395]	[2..271]
gi\|7507776 - gi\|7507776\|pir\|\|T16867 probable cytochrome P450 T13C5.1 [similarity] - Caenorhabditis elegans	1.0E-81	[114..395]	[77..334]
gi\|168279031 - gi\|168279031\|dbj\|BAG11395.1\| carboxy-terminal domain RNA polymerase II polypeptide A small phosphata... gi\|109097527 - gi\|109097527\|ref\|XP_001116527.1\| PREDICTED: nuclear LIM interactor-interacting factor 2 isoform 2 [M... gi\|67967557 - gi\|67967557\|dbj\|BAE00261.1\| unnamed protein product [Macaca fascicularis] CTDSP2 - CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase 2 gi\|114644094 - gi\|114644094\|ref\|XP_001167131.1\| PREDICTED: nuclear LIM interactor-interacting factor 2 [Pan troglod...	1.0E-76	[158..394]	[32..266]
ttm50-PA - The gene tiny tim 50 is referred to in FlyBase by the symbol Dmel\ttm50 (CG2713, FBgn0250874). It is... gi\|220953446, gi... - gi\|220953446\|gb\|ACL89266.1\| ttm50-PA [synthetic construct], gi\|220943268\|gb\|ACL84177.1\| ttm50-PA [sy...	2.0E-76	[77..394]	[84..380]
CTDS1_MOUSE - Carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase 1 OS=Mus musculus GN=Ctdsp...	5.0E-76	[114..393]	[2..254]

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Predicted Domain #1

Region A:
Residues: [1-188]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGFIANILCC SSDTSKTHRQ RQPPETNHNR NRNRKHSSNK AQTQGRKQKA TPNGDKMQYS  60
   61 TPEILLSSSD SGSNAGSKTM QENGNSGNGK LAPLSRDHSN NSYDEEKEYE DYNEGDVEMT 120
  121 EVNNAGEEEE EDDEAKEKQD HVVHEYNVDA DRNSSINDEA PPQQGLYQVG QEDMNPQYVA 180
  181 SSPDNDLN

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [189-397]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LIPTTEEDFS DLTHLQPDQY HAPGYDTLLP PKLQEFQQKK CLILDLDETL VHSSFKYMHS  60
   61 ADFVLPVEID DQVHNVYVIK RPGVDEFLNR VSQLYEVVVF TASVSRYANP LLDTLDPNGT 120
  121 IHHRLFREAC YNYEGNYIKN LSQIGRPLSE TIILDNSPAS YIFHPQHAVP ISSWFSDTHD 180
  181 NELLDIIPLL EDLSSGNVLD VGSVLDVTI

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	110.657577
Match:	PF03031
Description:	NLI interacting factor-like phosphatase

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits