YRC Public Data Repository - Protein Structure Prediction

Protein:	YLR012C
Organism:	Saccharomyces cerevisiae
Length:	122 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YLR012C.

Description	E-value	Query Range	Subject Range
gi\|151941180 - gi\|151941180\|gb\|EDN59558.1\| conserved protein [Saccharomyces cerevisiae YJM789] gi\|190406053 - gi\|190406053\|gb\|EDV09320.1\| conserved hypothetical protein [Saccharomyces cerevisiae RM11-1a] YL012_YEAST - Uncharacterized protein YLR012C OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YLR012C ... YLR012C - Putative protein of unknown function; YLR012C is not an essential gene	181.0	[0..24]	[122..1]
gi\|44986383 - gi\|44986383\|gb\|AAS54843.1\| AGR353Cp [Ashbya gossypii ATCC 10895] gi\|44986383, gi\|... - gi\|45201449\|ref\|NP_987019.1\| AGR353Cp [Ashbya gossypii ATCC 10895], gi\|44986383\|gb\|AAS54843.1\| AGR35...	49.0	[0..34]	[114..94]

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Predicted Domain #1

Region A:
Residues: [1-122]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKTAASRQKI FIEIKRKSLE HIQMKTVYYK EITYQQYLQL QPEQQEKYLA LCQKDFEQET  60
   61 ERIAFDRQGG VPGIARKFAQ EEVAWFDRVT TWSYMNAYIP SYRRRRNLLK IDMLKMSNAE 120
  121 EY

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

		MCM Score	SCOP Match	SCOP Description
View	Download	0.929	a.216.1	Description not found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits