| Protein: | CMS1 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 291 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CMS1.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..291] | [1..291] |
|
|
0.007 | [4..120] | [1081..1200] |
|
Region A: Residues: [1-291] |
1 11 21 31 41 51
| | | | | |
1 MSNPDDLDDG LAYDFDAEHE VIFDAKDGSP PTKKVQKRSI EQDDDDVDDI DGKKEERNSE 60
61 DDSNRPISKR QKKLQKKSKL IEKKKEESQY IVSQRKALPA SSPEKIIEYL TTLIREKNPD 120
121 LSVLELEELY FKRNDFLSTE KFDAERRLSN FPAFIQKFSV APKKIVFSMS NIRVADVYRS 180
181 LNGGKNCVKL FSKSKLKDDI ATVERLLTDS SKKSNKNKDS LYFIATPTRM QKIIEATDLL 240
241 FQGKEKLDII LDASYLDPKD NTILSFENAA VLCQVLKTFL NKKSSVKILL Y
|
| Detection Method: |  |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [66-291] |
1 11 21 31 41 51
| | | | | |
1 PISKRQKKLQ KKSKLIEKKK EESQYIVSQR KALPASSPEK IIEYLTTLIR EKNPDLSVLE 60
61 LEELYFKRND FLSTEKFDAE RRLSNFPAFI QKFSVAPKKI VFSMSNIRVA DVYRSLNGGK 120
121 NCVKLFSKSK LKDDIATVER LLTDSSKKSN KNKDSLYFIA TPTRMQKIIE ATDLLFQGKE 180
181 KLDIILDASY LDPKDNTILS FENAAVLCQV LKTFLNKKSS VKILLY
|
| Detection Method: | |
| Confidence: | 4.43 |
| Match: | 1wrbA |
| Description: | Crystal structure of the N-terminal RecA-like domain of DjVLGB, a pranarian Vasa-like RNA helicase |
Matching Structure (courtesy of the PDB): |
|
