YRC Public Data Repository - Protein Structure Prediction

Protein:	AQY2
Organism:	Saccharomyces cerevisiae
Length:	149 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for AQY2.

Description	E-value	Query Range	Subject Range
AQY22_YEAS2 - Aquaporin-like protein 2 OS=Saccharomyces cerevisiae (strain JAY291) GN=AQY2-2 PE=3 SV=1 AQY2_YEAST - Aquaporin-like protein 2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=AQY2 PE=1 SV=1 AQY2 - Water channel that mediates the transport of water across cell membranes, only expressed in prolifer... AQY22_YEAS7 - Aquaporin-like protein 2 OS=Saccharomyces cerevisiae (strain YJM789) GN=AQY2-2 PE=3 SV=1	6.0E-77	[1..149]	[1..149]
gi\|12484110 - gi\|12484110\|gb\|AAG53971.1\| aquaporin 2 [Saccharomyces chevalieri] asmbl_8495\|m.631... - TR64\|c0_g1_i1\|g.66 ORF TR64\|c0_g1_i1\|g.66 TR64\|c0_g1_i1\|m.66 type:complete len:290 (+) TR64\|c0_g1_i...	3.0E-55	[1..108]	[1..108]
gi\|18652256 - gi\|18652256\|gb\|AAL77035.1\|AF467246_1 aquaporin [Blumeria graminis f. sp. hordei]	7.0E-22	[38..109]	[24..93]

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Predicted Domain #1

Region A:
Residues: [1-149]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSNESNDLEK NISHLDPTGV DNAYIPPEQP ETKHSRFNID RDTLRNHFIA AVGEFCGTFM  60
   61 FLWCAYVICN VANHDVALTT EPEGSHPGQL IMIALGFGFS VMFSIWCFWW GFEPSRFSLF 120
  121 VFGQSHLTSQ MCSDVVSSDH CWDGCWWCR

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits