Protein: | VPS13 |
Organism: | Saccharomyces cerevisiae |
Length: | 3144 amino acids |
Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
No multiple sequence alignment data found for VPS13.
Region A: Residues: [1-394] |
1 11 21 31 41 51 | | | | | | 1 MLESLAANLL NRLLGSYVEN FDPNQLNVGI WSGDVKLKNL KLRKDCLDSL NLPIDVKSGI 60 61 LGDLVLTVPW SSLKNKPVKI IIEDCYLLCS PRSEDHENDE EMIKRAFRLK MRKVSEWELT 120 121 NQARILSTQS ENKTSSSSSE KNNAGFMQSL TTKIIDNLQV TIKNIHLRYE DMDGIFTTGP 180 181 SSVGLTLNEL SAVSTDSNWA PSFIDITQNI THKLLTLNSL CLYWNTDSPP LISDDDQDRS 240 241 LENFVRGFKD MIASKNSTAP KHQYILKPVS GLGKLSINKL GSTEEQPHID LQMFYDEFGL 300 301 ELDDTEYNDI LHVLSSIQLR QITKKFKKAR PSFAVSENPT EWFKYIAACV INEIHEKNKM 360 361 WTWESMKEKC EQRRLYTKLW VEKLKLKNLE APLR |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
Region A: Residues: [395-473] |
1 11 21 31 41 51 | | | | | | 1 DPIQEAQLSE LHKDLTYDEI ILFRSVAKRQ YAQYKLGMTE DSPTPTASSN IEPQTSNKSA 60 61 TKNNGSWLSS WWNGKPTEE |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
Region A: Residues: [474-863] |
1 11 21 31 41 51 | | | | | | 1 VDEDLIMTEE QRQELYDAIE FDENEDKGPV LQVPRERVEL RVTSLLKKGS FTIRKKKQNL 60 61 NLGSIIFENC KVDFAQRPDS FLSSFQLNKF SLEDGSPNAL YKHIISVRNS SKDQSSIDNH 120 121 ATGEEEEEDE PLLRASFELN PLDGLADSNL NIKLLGMTVF YHVHFITEVH KFFKASNQHM 180 181 ETIGNIVNAA EATVEGWTTQ TRMGIESLLE DHKTVNVSLD LQAPLIILPL DPHDWDTPCA 240 241 IIDAGHMSIL SDLVPKEKIK EIKELSPEEY DKIDGNEINR LMFDRFQILS QDTQIFVGPD 300 301 IQSTIGKINT ASSTNDFRIL DKMKLELTVD LSILPKAYKL PTIRVFGHLP RLSLSINDIQ 360 361 YKTIMNLIAN SIPSMIDDEE NNGDYVNYSS |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
Region A: Residues: [864-1227] |
1 11 21 31 41 51 | | | | | | 1 GSEKEMKKQI QLQLKNTLKA LENMQPLQIE QKFLELHFDI DQAKIAFFQC IKNDSRNSEK 60 61 LVDILCQRLN FNFDKRAKEM NLDLRVHSLD VEDYIELTDN KEFKNLISSG VEKVTRSQKD 120 121 LFTLKYKRVQ RIVPHNDTLI ELFDQDIVMH MSELQLVLTP RSVLTLMNYA MLTFTDPNAP 180 181 EMPADVLRHN KEDRDDAPQK INMKIKMEAV NVIFNDDSIK LATLVLSAGE FTMVLLPERY 240 241 NINLKLGGLE LTDETNESFS RDSVFRKIIQ MKGQELVELS YESFDPATNT KDYDSFLKYS 300 301 TGSMHVNFIE SAVNRMVNFF AKFQKSKVSF DRARLAAYNQ APSIDAVNNM KMDIVIKAPI 360 361 IQFP |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
Region A: Residues: [1228-1353] |
1 11 21 31 41 51 | | | | | | 1 KLVGTQENNY DTMRFYLGEF FIENKFSVID ESHKINHIKL GVREGQLSSN LNFDGSSQQL 60 61 YLVENIGLLF NIDRDPLPQD DTPELKVTSN FESFALDLTE NQLTYLLEIS NKVSSAFNIT 120 121 DENSGE |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
Region A: Residues: [1354-1739] |
1 11 21 31 41 51 | | | | | | 1 SGGKGEIKSP SPDPASLSSE SERTATPQSL QGSNKSNIKN PEQKYLDFSF KAPKIALTLY 60 61 NKTKGVTSLN DCGLTRIMFQ DIGCSLGLKN DGTVDGQAHV AAFRIEDVRN IKDNKHTELI 120 121 PKSKNKEYQF VANISRKNLE VGRLLNISMT MDSPKMILAM DYLVSLKEFF DAIMSKSHEN 180 181 NLYYPENTNQ KPENKAIVES VQEGGDVTKI QYSVNIIETA LILLADPCDM NSEAISFKIG 240 241 QFLVTDQNIM TVAANNVGIF LFKMNSSEEK LRLLDDFSSS LTIDKRNSTP QTLMTNIQLS 300 301 VQPLLMRISL RDIRLAMLIF KRVTTLLNKM TEKEDNGEEE ESTDKIQFSH EFERKLAVLD 360 361 PSILGERSRA SQSSDSESIE VPTAIL |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
Region A: Residues: [1740-1864] |
1 11 21 31 41 51 | | | | | | 1 KNETFNADLG GLRFILIGDV HEMPILDMNV NEITASAKDW STDFEALASL ETYVNIFNYS 60 61 RSSWEPLLEM IPITFHLSKG HSEMDPAFSF DILTQRIAEI TLSARSIAML SHIPASLTEE 120 121 LPLAS |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
Region A: Residues: [1865-2169] |
1 11 21 31 41 51 | | | | | | 1 RVSQKPYQLV NDTELDFDVW IQDKTTEDNK NEVVLLKANT SLPWEFEDWR SIREKLDIDK 60 61 SKNILGVCVS GQNYKTIMNI DATTEGENLH VLSPPRNNVH NRIVCEARCD ENNVKIITFR 120 121 STLVIENTTS TEIELLVDSK DPNKPSLKYA IKPHQSKSVP VEYAYDSDIR IRPASEDIYD 180 181 WSQQTLSWKS LLSNQMSIFC SSKEDSNQRF HFEIGAKYDE REPLAKIFPH MKIVVSASMT 240 241 IENLLPADIN FSIFDKREEK RTDFLKTGES MEVHHISLDS FLLMSVQPLQ DEASASKPSI 300 301 VNTPH |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
Region A: Residues: [2170-2278] |
1 11 21 31 41 51 | | | | | | 1 KSPLNPEDSL SLTLSGGQNL LLKLDYKNID GTRSKVIRIY SPYIIMNSTD RELYIQSSLL 60 61 NIAQSKILLE NEKRYTIPKM FSFDKEDDKS NRARIRFKES EWSSKLSFD |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
Region A: Residues: [2279-2541] |
1 11 21 31 41 51 | | | | | | 1 AIGQSFDASV RIKNKEQESN LGINISEGKG KYLLSKVIEI APRYIISNTL DIPIEVCETG 60 61 SMDVQQIESN ITKPLYRMRN IVDKQLVLKF LGGDSNWSQP FFIKNVGVTY LKVLKNSRHK 120 121 LLKIEILLDK ATIFIRIKDG GDRWPFSIRN FSDHDFIFYQ RDPRKVSDPY KDDQSNESSS 180 181 RSFKPIFYRI PSKSIMPYAW DFPTAKEKYL VLESGTRTRE VRLAEIGELP PLRLDKRSKD 240 241 KPAPIVGLHV VADDDMQALV IVN |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
Region A: Residues: [2542-2619] |
1 11 21 31 41 51 | | | | | | 1 YKANVGLYKL KTASATTTSS VSVNSSVTDG FVQKDEDEKV NTQIVVSFKG VGISLINGRL 60 61 QELLYINMRG IELRYNES |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
MCM Score |
SCOP Match |
SCOP Description | ||
View | Download | 0.851 | b.55.2 | Description not found. |
Region A: Residues: [2620-3021] |
1 11 21 31 41 51 | | | | | | 1 KAYQTFSWKM KWMQIDNQLF SGNYSNILYP TEIPYTEKEI ENHPVISGSI SKVNDSLQAV 60 61 PYFKHVTLLI QEFSIQLDED MLYAMMDFIK FPGSPWIMDS RDYKYDEEIQ LPDVSELKTA 120 121 GDIYFEIFHI QPTVLHLSFI RSDEISPGLA EETEESFSSS LYYVHMFAMT LGNINEAPVK 180 181 VNSLFMDNVR VPLPILMDHI ERHYTTQFVY QIHKILGSAD CFGNPVGLFN TISSGVWDLF 240 241 YEPYQGYMMN DRPQEIGIHL AKGGLSFAKK TVFGLSDSMS KFTGSMAKGL SVTQDLEFQR 300 301 VRRLQQRINK NNRNALANSA QSFASTLGSG LSGIALDPYK AMQKEGAAGF LKGLGKGIVG 360 361 LPTKTAIGFL DLTSNLSQGV KSTTTVLDMQ KGCRVRLPRY VD |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
Region A: Residues: [3022-3144] |
1 11 21 31 41 51 | | | | | | 1 HDQIIKPYDL REAQGQYWLK TVNGGVFMND EYLSHVILPG KELAVIVSMQ HIAEVQMATQ 60 61 ELMWSTGYPS IQGITLERSG LQIKLKSQSE YFIPISDPEE RRSLYRNIAI AVREYNKYCE 120 121 AIL |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
MCM Score |
SCOP Match |
SCOP Description | ||
View | Download | 0.841 | b.55.1 | PH domain-like |