| Protein: | VPS13 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 3144 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
No multiple sequence alignment data found for VPS13.
|
Region A: Residues: [1-394] |
1 11 21 31 41 51
| | | | | |
1 MLESLAANLL NRLLGSYVEN FDPNQLNVGI WSGDVKLKNL KLRKDCLDSL NLPIDVKSGI 60
61 LGDLVLTVPW SSLKNKPVKI IIEDCYLLCS PRSEDHENDE EMIKRAFRLK MRKVSEWELT 120
121 NQARILSTQS ENKTSSSSSE KNNAGFMQSL TTKIIDNLQV TIKNIHLRYE DMDGIFTTGP 180
181 SSVGLTLNEL SAVSTDSNWA PSFIDITQNI THKLLTLNSL CLYWNTDSPP LISDDDQDRS 240
241 LENFVRGFKD MIASKNSTAP KHQYILKPVS GLGKLSINKL GSTEEQPHID LQMFYDEFGL 300
301 ELDDTEYNDI LHVLSSIQLR QITKKFKKAR PSFAVSENPT EWFKYIAACV INEIHEKNKM 360
361 WTWESMKEKC EQRRLYTKLW VEKLKLKNLE APLR
|
| Detection Method: |  |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [395-473] |
1 11 21 31 41 51
| | | | | |
1 DPIQEAQLSE LHKDLTYDEI ILFRSVAKRQ YAQYKLGMTE DSPTPTASSN IEPQTSNKSA 60
61 TKNNGSWLSS WWNGKPTEE
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [474-863] |
1 11 21 31 41 51
| | | | | |
1 VDEDLIMTEE QRQELYDAIE FDENEDKGPV LQVPRERVEL RVTSLLKKGS FTIRKKKQNL 60
61 NLGSIIFENC KVDFAQRPDS FLSSFQLNKF SLEDGSPNAL YKHIISVRNS SKDQSSIDNH 120
121 ATGEEEEEDE PLLRASFELN PLDGLADSNL NIKLLGMTVF YHVHFITEVH KFFKASNQHM 180
181 ETIGNIVNAA EATVEGWTTQ TRMGIESLLE DHKTVNVSLD LQAPLIILPL DPHDWDTPCA 240
241 IIDAGHMSIL SDLVPKEKIK EIKELSPEEY DKIDGNEINR LMFDRFQILS QDTQIFVGPD 300
301 IQSTIGKINT ASSTNDFRIL DKMKLELTVD LSILPKAYKL PTIRVFGHLP RLSLSINDIQ 360
361 YKTIMNLIAN SIPSMIDDEE NNGDYVNYSS
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [864-1227] |
1 11 21 31 41 51
| | | | | |
1 GSEKEMKKQI QLQLKNTLKA LENMQPLQIE QKFLELHFDI DQAKIAFFQC IKNDSRNSEK 60
61 LVDILCQRLN FNFDKRAKEM NLDLRVHSLD VEDYIELTDN KEFKNLISSG VEKVTRSQKD 120
121 LFTLKYKRVQ RIVPHNDTLI ELFDQDIVMH MSELQLVLTP RSVLTLMNYA MLTFTDPNAP 180
181 EMPADVLRHN KEDRDDAPQK INMKIKMEAV NVIFNDDSIK LATLVLSAGE FTMVLLPERY 240
241 NINLKLGGLE LTDETNESFS RDSVFRKIIQ MKGQELVELS YESFDPATNT KDYDSFLKYS 300
301 TGSMHVNFIE SAVNRMVNFF AKFQKSKVSF DRARLAAYNQ APSIDAVNNM KMDIVIKAPI 360
361 IQFP
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [1228-1353] |
1 11 21 31 41 51
| | | | | |
1 KLVGTQENNY DTMRFYLGEF FIENKFSVID ESHKINHIKL GVREGQLSSN LNFDGSSQQL 60
61 YLVENIGLLF NIDRDPLPQD DTPELKVTSN FESFALDLTE NQLTYLLEIS NKVSSAFNIT 120
121 DENSGE
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [1354-1739] |
1 11 21 31 41 51
| | | | | |
1 SGGKGEIKSP SPDPASLSSE SERTATPQSL QGSNKSNIKN PEQKYLDFSF KAPKIALTLY 60
61 NKTKGVTSLN DCGLTRIMFQ DIGCSLGLKN DGTVDGQAHV AAFRIEDVRN IKDNKHTELI 120
121 PKSKNKEYQF VANISRKNLE VGRLLNISMT MDSPKMILAM DYLVSLKEFF DAIMSKSHEN 180
181 NLYYPENTNQ KPENKAIVES VQEGGDVTKI QYSVNIIETA LILLADPCDM NSEAISFKIG 240
241 QFLVTDQNIM TVAANNVGIF LFKMNSSEEK LRLLDDFSSS LTIDKRNSTP QTLMTNIQLS 300
301 VQPLLMRISL RDIRLAMLIF KRVTTLLNKM TEKEDNGEEE ESTDKIQFSH EFERKLAVLD 360
361 PSILGERSRA SQSSDSESIE VPTAIL
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [1740-1864] |
1 11 21 31 41 51
| | | | | |
1 KNETFNADLG GLRFILIGDV HEMPILDMNV NEITASAKDW STDFEALASL ETYVNIFNYS 60
61 RSSWEPLLEM IPITFHLSKG HSEMDPAFSF DILTQRIAEI TLSARSIAML SHIPASLTEE 120
121 LPLAS
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [1865-2169] |
1 11 21 31 41 51
| | | | | |
1 RVSQKPYQLV NDTELDFDVW IQDKTTEDNK NEVVLLKANT SLPWEFEDWR SIREKLDIDK 60
61 SKNILGVCVS GQNYKTIMNI DATTEGENLH VLSPPRNNVH NRIVCEARCD ENNVKIITFR 120
121 STLVIENTTS TEIELLVDSK DPNKPSLKYA IKPHQSKSVP VEYAYDSDIR IRPASEDIYD 180
181 WSQQTLSWKS LLSNQMSIFC SSKEDSNQRF HFEIGAKYDE REPLAKIFPH MKIVVSASMT 240
241 IENLLPADIN FSIFDKREEK RTDFLKTGES MEVHHISLDS FLLMSVQPLQ DEASASKPSI 300
301 VNTPH
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [2170-2278] |
1 11 21 31 41 51
| | | | | |
1 KSPLNPEDSL SLTLSGGQNL LLKLDYKNID GTRSKVIRIY SPYIIMNSTD RELYIQSSLL 60
61 NIAQSKILLE NEKRYTIPKM FSFDKEDDKS NRARIRFKES EWSSKLSFD
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [2279-2541] |
1 11 21 31 41 51
| | | | | |
1 AIGQSFDASV RIKNKEQESN LGINISEGKG KYLLSKVIEI APRYIISNTL DIPIEVCETG 60
61 SMDVQQIESN ITKPLYRMRN IVDKQLVLKF LGGDSNWSQP FFIKNVGVTY LKVLKNSRHK 120
121 LLKIEILLDK ATIFIRIKDG GDRWPFSIRN FSDHDFIFYQ RDPRKVSDPY KDDQSNESSS 180
181 RSFKPIFYRI PSKSIMPYAW DFPTAKEKYL VLESGTRTRE VRLAEIGELP PLRLDKRSKD 240
241 KPAPIVGLHV VADDDMQALV IVN
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [2542-2619] |
1 11 21 31 41 51
| | | | | |
1 YKANVGLYKL KTASATTTSS VSVNSSVTDG FVQKDEDEKV NTQIVVSFKG VGISLINGRL 60
61 QELLYINMRG IELRYNES
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.851 | b.55.2 | Description not found. |
|
Region A: Residues: [2620-3021] |
1 11 21 31 41 51
| | | | | |
1 KAYQTFSWKM KWMQIDNQLF SGNYSNILYP TEIPYTEKEI ENHPVISGSI SKVNDSLQAV 60
61 PYFKHVTLLI QEFSIQLDED MLYAMMDFIK FPGSPWIMDS RDYKYDEEIQ LPDVSELKTA 120
121 GDIYFEIFHI QPTVLHLSFI RSDEISPGLA EETEESFSSS LYYVHMFAMT LGNINEAPVK 180
181 VNSLFMDNVR VPLPILMDHI ERHYTTQFVY QIHKILGSAD CFGNPVGLFN TISSGVWDLF 240
241 YEPYQGYMMN DRPQEIGIHL AKGGLSFAKK TVFGLSDSMS KFTGSMAKGL SVTQDLEFQR 300
301 VRRLQQRINK NNRNALANSA QSFASTLGSG LSGIALDPYK AMQKEGAAGF LKGLGKGIVG 360
361 LPTKTAIGFL DLTSNLSQGV KSTTTVLDMQ KGCRVRLPRY VD
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [3022-3144] |
1 11 21 31 41 51
| | | | | |
1 HDQIIKPYDL REAQGQYWLK TVNGGVFMND EYLSHVILPG KELAVIVSMQ HIAEVQMATQ 60
61 ELMWSTGYPS IQGITLERSG LQIKLKSQSE YFIPISDPEE RRSLYRNIAI AVREYNKYCE 120
121 AIL
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.841 | b.55.1 | PH domain-like |
