| Protein: | RIX7 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 837 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RIX7.
| Description | E-value | Query Range |
Subject Range |
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0.0 | [7..831] | [14..779] |
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0.0 | [2..831] | [41..811] |
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0.0 | [5..831] | [11..778] |
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0.0 | [1..837] | [1..837] |
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0.0 | [7..831] | [14..777] |
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0.0 | [6..835] | [4..776] |
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0.0 | [1..831] | [1..773] |
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Region A: Residues: [1-105] |
1 11 21 31 41 51
| | | | | |
1 MVKVKSKKNS LTSSLDNKIV DLIYRLLEEK TLDRKRSLRQ ESQGEEGENN EGEEDEDIFE 60
61 SMFFAKDLTA GEIFTFCLTK DLSLQRVKKV VLQKTIDRML KDVIE
|
| Detection Method: |  |
| Confidence: | 630.9897 |
| Match: | 1e32A_ |
| Description: | Membrane fusion atpase p97 N-terminal domain , P97-Nn; Membrane fusion atpase p97, D1 domain; Membrane fusion atpase p97 domain 2, P97-Nc |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [106-201] |
1 11 21 31 41 51
| | | | | |
1 SELEEFGSYP GYNNEEEEKP SLEEELAKKN MMIERDTNEM NKRITSTWSK SGSVSESITE 60
61 TDDPKTEEVK KSKKRSKEGT CKVKRQKIKE DRSPPN
|
| Detection Method: | |
| Confidence: | 630.9897 |
| Match: | 1e32A_ |
| Description: | Membrane fusion atpase p97 N-terminal domain , P97-Nn; Membrane fusion atpase p97, D1 domain; Membrane fusion atpase p97 domain 2, P97-Nc |
| Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [202-377] |
1 11 21 31 41 51
| | | | | |
1 SSLKSLGGMD DVVAQLMELI GLPILHPEIF LSTGVEPPRG VLLHGPPGCG KTSIANALAG 60
61 ELQVPFISIS APSVVSGMSG ESEKKIRDLF DEARSLAPCL VFFDEIDAIT PKRDGGAQRE 120
121 MERRIVAQLL TSMDELTMEK TNGKPVIIIG ATNRPDSLDA ALRRAGRFDR EICLNV
|
| Detection Method: | |
| Confidence: | 630.9897 |
| Match: | 1e32A_ |
| Description: | Membrane fusion atpase p97 N-terminal domain , P97-Nn; Membrane fusion atpase p97, D1 domain; Membrane fusion atpase p97 domain 2, P97-Nc |
| Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [378-474] |
1 11 21 31 41 51
| | | | | |
1 PNEVSRLHIL KKMSDNLKID GAIDFAKLAK LTPGFVGADL KALVTAAGTC AIKRIFQTYA 60
61 NIKSTPTTAT DSSEDNMEID ETANGDESSL KNTANMI
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| Detection Method: | |
| Confidence: | 630.9897 |
| Match: | 1e32A_ |
| Description: | Membrane fusion atpase p97 N-terminal domain , P97-Nn; Membrane fusion atpase p97, D1 domain; Membrane fusion atpase p97 domain 2, P97-Nc |
| Matching Structure (courtesy of the PDB): |
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Region A: Residues: [475-564] |
1 11 21 31 41 51
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1 DPLPLSVVQQ FIRNYPEPLS GEQLSLLSIK YEDFLKALPT IQPTAKREGF ATVPDVTWAN 60
61 VGALQRVRLE LNMAIVQPIK RPELYEKVGI
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| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.551 | a.60.8 | HRDC-like |
| View | Download | 0.406 | a.39.1 | EF-hand |
| View | Download | 0.578 | a.80.1 | DNA polymerase III clamp loader subunits, C-terminal domain |
| View | Download | 0.745 | a.118.14 | FliG |
| View | Download | 0.422 | a.7.6 | Ribosomal protein S20 |
| View | Download | 0.386 | d.26.1 | FKBP-like |
| View | Download | 0.344 | a.4.9 | Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 |
| View | Download | 0.334 | a.8.1 | Bacterial immunoglobulin/albumin-binding domains |
| View | Download | 0.328 | a.23.1 | HSC20 (HSCB), C-terminal oligomerisation domain |
| View | Download | 0.311 | d.52.5 | Probable GTPase Der, C-terminal domain |
| View | Download | 0.311 | a.69.2 | Ypt/Rab-GAP domain of gyp1p |
| View | Download | 0.311 | a.24.10 | Histidine-containing phosphotransfer domain, HPT domain |
| View | Download | 0.308 | a.24.13 | Domain of the SRP/SRP receptor G-proteins |
| View | Download | 0.305 | d.95.1 | Glucose permease domain IIB |
| View | Download | 0.294 | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.292 | a.44.1 | Disulphide-bond formation facilitator (DSBA), insertion domain |
| View | Download | 0.286 | a.112.1 | Description not found. |
| View | Download | 0.272 | a.4.3 | ARID-like |
| View | Download | 0.267 | a.28.1 | ACP-like |
| View | Download | 0.256 | d.58.17 | Metal-binding domain |
| View | Download | 0.256 | a.48.3 | Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 |
| View | Download | 0.251 | e.37.1 | Bifunctional dehydrogenase/ferrochelatase Met8p, dimerisation and C-terminal domains |
| View | Download | 0.245 | a.46.1 | Methionine synthase domain |
| View | Download | 0.239 | a.44.1 | Disulphide-bond formation facilitator (DSBA), insertion domain |
| View | Download | 0.239 | a.4.2 | Methylated DNA-protein cysteine methyltransferase, C-terminal domain |
| View | Download | 0.236 | a.74.1 | Cyclin-like |
| View | Download | 0.230 | a.24.3 | Cytochromes |
| View | Download | 0.227 | a.28.1 | ACP-like |
| View | Download | 0.224 | a.28.2 | Colicin E immunity proteins |
| View | Download | 0.223 | a.8.2 | Plasmid maintenance system epsilon/zeta, antidote epsilon subunit |
| View | Download | 0.222 | a.77.1 | DEATH domain |
| View | Download | 0.220 | a.80.1 | DNA polymerase III clamp loader subunits, C-terminal domain |
| View | Download | 0.218 | a.74.1 | Cyclin-like |
| View | Download | 0.214 | a.35.1 | lambda repressor-like DNA-binding domains |
| View | Download | 0.212 | a.41.1 | Domain of poly(ADP-ribose) polymerase |
| View | Download | 0.200 | d.228.1 | Replication modulator SeqA, C-terminal DNA-binding domain |
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Region A: Residues: [565-782] |
1 11 21 31 41 51
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1 SAPGGVLLWG PPGCGKTLLA KAVANESRAN FISIKGPELL NKYVGESERS IRQVFTRARA 60
61 SVPCVIFFDE LDALVPRRDT SLSESSSRVV NTLLTELDGL NDRRGIFVIG ATNRPDMIDP 120
121 AMLRPGRLDK SLFIELPNTE EKLDIIKTLT KSHGTPLSSD VDFEEIIRNE KCNNFSGADL 180
181 AALVRESSVL ALKRKFFQSE EIQSVLDNDL DKEFEDLS
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| Detection Method: | |
| Confidence: | 85.886057 |
| Match: | PF00004 |
| Description: | ATPase family associated with various cellular activities (AAA) |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [783-837] |
1 11 21 31 41 51
| | | | | |
1 VGVSGEEIIV TMSDFRSALR KIKPSVSDKD RLKYDRLNKK MGLTEEMKDA EEMKQ
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| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.340 | a.4.1 | Homeodomain-like |
| View | Download | 0.320 | a.108.1 | Ribosomal protein L7/12, oligomerisation (N-terminal) domain |
| View | Download | 0.507 | a.50.1 | Anaphylotoxins (complement system) |
| View | Download | 0.395 | a.112.1 | Description not found. |
| View | Download | 0.335 | a.159.2 | FF domain |
| View | Download | 0.319 | a.46.2 | Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain |
| View | Download | 0.293 | a.65.1 | Annexin |
| View | Download | 0.282 | a.4.1 | Homeodomain-like |
| View | Download | 0.279 | a.4.1 | Homeodomain-like |
| View | Download | 0.271 | a.4.1 | Homeodomain-like |
| View | Download | 0.267 | a.52.1 | Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin |
| View | Download | 0.253 | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.248 | a.4.1 | Homeodomain-like |
| View | Download | 0.236 | a.4.1 | Homeodomain-like |
| View | Download | 0.228 | a.52.1 | Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin |
| View | Download | 0.219 | a.76.1 | Iron-dependent represor protein, dimerization domain |
| View | Download | 0.212 | a.4.1 | Homeodomain-like |
| View | Download | 0.203 | a.60.5 | Barrier-to-autointegration factor, BAF |
| View | Download | 0.201 | a.49.1 | C-terminal domain of B transposition protein |
