YRC Public Data Repository - Protein Structure Prediction

Protein:	YLL017W
Organism:	Saccharomyces cerevisiae
Length:	103 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YLL017W.

Description	E-value	Query Range	Subject Range
gi\|7507776 - gi\|7507776\|pir\|\|T16867 probable cytochrome P450 T13C5.1 [similarity] - Caenorhabditis elegans	5.0E-22	[1..103]	[1..103]
YES_CHICK - Tyrosine-protein kinase Yes OS=Gallus gallus GN=YES1 PE=1 SV=3	7.0E-22	[2..101]	[71..154]
FYN_RAT - Tyrosine-protein kinase Fyn OS=Rattus norvegicus GN=Fyn PE=1 SV=1 gi\|126310436 - gi\|126310436\|ref\|XP_001368891.1\| PREDICTED: similar to FYN oncogene related to SRC, FGR, YES isoform...	1.0E-21	[9..101]	[65..147]
FYN - FYN oncogene related to SRC, FGR, YES gi\|114608932, gi... - gi\|114608942\|ref\|XP_001159342.1\| PREDICTED: protein-tyrosine kinase fyn isoform 20 [Pan troglodytes]... tr\|G1TA73\|G1TA73... - pep:novel chromosome:oryCun2:12:99426871:99488568:-1 gene:ENSOCUG00000015784 transcript:ENSOCUT00000... CCDS5094.1_1 - null	1.0E-21	[9..101]	[65..147]
gi\|14627120 - gi\|14627120\|emb\|CAC44028.1\| fyn protein [Hylobates sp.] gi\|119568668, gi... - gi\|56208156\|emb\|CAI22301.1\| FYN oncogene related to SRC, FGR, YES [Homo sapiens], gi\|23510362\|ref\|NP... gi\|114608916 - gi\|114608916\|ref\|XP_001158713.1\| PREDICTED: protein-tyrosine kinase fyn isoform 8 [Pan troglodytes]	1.0E-21	[9..101]	[65..147]
FYN_MOUSE - Proto-oncogene tyrosine-protein kinase Fyn (EC 2.7.10.2) (p59-Fyn) - Mus musculus (Mouse)	1.0E-21	[9..101]	[65..147]
FYN_XENLA - Tyrosine-protein kinase Fyn OS=Xenopus laevis GN=fyn PE=2 SV=3	2.0E-21	[9..101]	[65..147]

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Predicted Domain #1

Region A:
Residues: [1-103]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSCTASYAGM TTPVKDKEGH GIPCLQPIDV VECTYQYFTK SRNKLSLRVG DLIYVLTKGS  60
   61 NGWWDGVLIR HSANNNNNSL ILDRGWFPPS FYTVHSKRTT RGA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	20.69897
Match:	1g83A_
Description:	Fyn proto-oncogene tyrosine kinase, SH3 domain; Tyrosine kinase Fyn
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
binding	0.375837873453985	bayes_pls_golite062009
protein binding	0.25580402341401	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: