YRC Public Data Repository - Protein Structure Prediction

Protein:	COX17
Organism:	Saccharomyces cerevisiae
Length:	69 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for COX17.

Description	E-value	Query Range	Subject Range
gi\|62901856 - gi\|62901856\|gb\|AAY18879.1\| COX17 [synthetic construct]	82.0	[0..2]	[65..26]
gi\|76608839 - gi\|76608839\|ref\|XP_877771.1\| PREDICTED: similar to COX17 homolog, cytochrome c oxidase assembly prot...	80.0	[0..1]	[65..26]
COX17_SCHPO - Cytochrome c oxidase copper chaperone OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=cox1... cox17 - metallochaperone Cox17	76.0	[0..2]	[65..7]
gi\|55661839, gi\|... - gi\|55661839\|emb\|CAH71087.1\| OTTHUMP00000018371 [Homo sapiens], gi\|119629170\|gb\|EAX08765.1\| hCG202026...	76.0	[0..1]	[65..1]
CE19849 - status:Confirmed UniProt:Q9TZ68 protein_id:AAC68797.1	76.0	[0..1]	[65..1]
COX17_CANLF - Cytochrome c oxidase copper chaperone OS=Canis lupus familiaris GN=COX17 PE=3 SV=3	75.0	[0..1]	[65..1]
gi\|114649557 - gi\|114649557\|ref\|XP_001149835.1\| PREDICTED: similar to COX17 [Pan troglodytes]	74.0	[0..1]	[65..1]
gi\|9022433, gi\|1... - gi\|9022433\|gb\|AAF82382.1\|AF280543_1 putative copper chaperone Cox17 [Chlamydomonas reinhardtii], gi\|...	73.0	[0..2]	[65..15]
CX171_ARATH - Cytochrome c oxidase copper chaperone 1 OS=Arabidopsis thaliana GN=COX17-1 PE=2 SV=1	73.0	[0..4]	[65..13]

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Predicted Domain #1

Region A:
Residues: [1-69]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTETDKKQEQ ENHAECEDKP KPCCVCKPEK EERDTCILFN GQDSEKCKEF IEKYKECMKG  60
   61 YGFEVPSAN

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	17.30103
Match:	1u96A
Description:	Solution Structure of Yeast Cox17 with Copper Bound
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits