YRC Public Data Repository - Protein Structure Prediction

Protein:	SRL3
Organism:	Saccharomyces cerevisiae
Length:	152 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SRL3.

Description	E-value	Query Range	Subject Range
SRL3_YEAST - Protein SRL3 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SRL3 PE=1 SV=2 SRL3 - Cytoplasmic protein that, when overexpressed, suppresses the lethality of a rad53 null mutation; pot...	283.0	[0..1]	[152..95]
gi\|44982923 - gi\|44982923\|gb\|AAS52153.1\| ADR233Wp [Ashbya gossypii ATCC 10895] gi\|44982923, gi\|... - gi\|45188106\|ref\|NP_984329.1\| ADR233Wp [Ashbya gossypii ATCC 10895], gi\|44982923\|gb\|AAS52153.1\| ADR23...	48.0	[0..1]	[151..60]

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Predicted Domain #1

Region A:
Residues: [1-152]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFPSPTPPLV SPTAVIEEEN DDSVREFSRT LKSRLNCAMV KLSKEHEQVA LIPPPPTEKI  60
   61 RKGSYSNKFA AKHRRCHSLD ESKKFLSSLE DSSAHAAFLK AISSKHAKSN RVDNVNVSPL 120
  121 RWSSHRRTQS TQENSLQEVV AIDTLLKMSS SD

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits