YRC Public Data Repository - Protein Structure Prediction

Protein:	OMA1
Organism:	Saccharomyces cerevisiae
Length:	314 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for OMA1.

Description	E-value	Query Range	Subject Range
oma1 - metallopeptidase Oma1 OMA1_SCHPO - Mitochondrial metalloendopeptidase OMA1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=om...	3.0E-62	[2..301]	[29..321]
gi\|7507776 - gi\|7507776\|pir\|\|T16867 probable cytochrome P450 T13C5.1 [similarity] - Caenorhabditis elegans	3.0E-60	[10..311]	[131..426]
OMA1_MOUSE - Metalloendopeptidase OMA1, mitochondrial OS=Mus musculus GN=Oma1 PE=1 SV=1	2.0E-58	[19..305]	[175..465]
HTPX_AGRFC - Protease HtpX homolog OS=Agrobacterium fabrum (strain C58 / ATCC 33970) GN=htpX PE=3 SV=1 gi\|25296097, gi\|... - pir\|\|AI2923 proteinase heat shock protein htpx [imported] - Agrobacterium tumefaciens (strain C58, D...	3.0E-45	[30..305]	[1..292]
gi\|12517478, gi\|... - gi\|15803474\|ref\|NP_289507.1\| hypothetical protein Z4280 [Escherichia coli O157:H7 EDL933], gi\|125174... gi\|13363283 - gi\|13363283\|dbj\|BAB37234.1\| hypothetical protein [Escherichia coli O157:H7 str. Sakai] gi\|13363283 - gi\|13363283\|dbj\|BAB37234.1\| hypothetical protein [Escherichia coli O157:H7] gi\|209760206, gi... - pir\|\|F85950 hypothetical protein yggG [imported] - Escherichia coli (strain O157:H7, substrain EDL9...	2.0E-43	[11..289]	[22..288]
gi\|882465\|gb\|AAA... - ORF_o294; was o219p before splice; alternate name yggG? gi\|7466944, gi\|8... - gi\|882465\|gb\|AAA69103.1\| ORF_o294; was o219p before splice; alternate name yggG?, gi\|7466944\|pir\|\|G6... gi\|16130837, gi\|... - gb\|AAC75973.1\| orf, hypothetical protein; conserved protein [Escherichia coli K12], gi\|16130837\|ref...	6.0E-43	[11..289]	[22..288]
HTPX_RHILO - Probable protease htpX homolog OS=Rhizobium loti GN=htpX PE=3 SV=1 HTPX_RHILO - Protease HtpX homolog OS=Rhizobium loti (strain MAFF303099) GN=htpX PE=3 SV=1	1.0E-42	[30..292]	[1..280]

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Predicted Domain #1

Region A:
Residues: [1-314]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFRYDNGPSY RRFNNGEYSQ KSSFKSILLD KSSRKYLALL FGGCSLFYYT HLDKAPVSDR  60
   61 SRFIWVSRPL ELTIGNYTYK SIWRQTQQEI LPPQHPLSIK IENIFMKIVE AAYKDPSVDN 120
  121 SLLDGIKWEI HVVNDPTASP NAFVLPGGKV FIFSSILPIC ANDDGIATVL AHEFAHQLAR 180
  181 HTAENLSKAP IYSLLGLVLY TVTGAHAINN ILLDGFLRMP ASRQMETEAD YIGLMIMSRA 240
  241 CFQPQESIKV WERMANFEKQ MNRGGVVNME FLSTHPASTR RIENMSKWLP KANEIYEQSD 300
  301 CSSMGNYYKS FFSM

[Run NCBI BLAST on this sequence.]

Detection Method:	ORFEUS
Confidence:	7.11
Match:	1qu7A
Description:	Cytoplasmic domain of a serine chemotaxis receptor
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits