YRC Public Data Repository - Protein Structure Prediction

Protein:	YKR070W
Organism:	Saccharomyces cerevisiae
Length:	352 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YKR070W.

Description	E-value	Query Range	Subject Range
gi\|190409882 - gi\|190409882\|gb\|EDV13147.1\| conserved hypothetical protein [Saccharomyces cerevisiae RM11-1a] YKR070W - Putative protein of unknown function; the authentic, non-tagged protein is detected in highly purifi... YK50_YEAST - Uncharacterized protein YKR070W OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YKR070W ...	2.0E-73	[1..352]	[1..352]
gi\|10177912 - gi\|10177912\|dbj\|BAB11323.1\| 4-nitrophenylphosphatase-like protein [Arabidopsis thaliana]	8.0E-65	[5..346]	[10..297]
gi\|159491082, gi... - gi\|28316388\|dbj\|BAC56941.1\| phosphoglycolate phosphatase precursor [Chlamydomonas reinhardtii], gi\|1...	4.0E-57	[4..344]	[37..320]
PDXP - pyridoxal (pyridoxine, vitamin B6) phosphatase	5.0E-56	[7..347]	[13..294]
gi\|14521805, gi\|... - gi\|5459025\|emb\|CAB50511.1\| Haloacid dehalogenase-like hydrolase, NagD protein homolog [Pyrococcus ab... gi\|7445044, gi\|5... - pir\|\|A75009 probable aryl phosphatase (EC 3.1.3.-) PHO13 PAB1056 - Pyrococcus abyssi (strain Orsay),...	1.0E-55	[15..347]	[3..259]
YF38_SCHPO - Uncharacterized CDP-alcohol phosphatidyltransferase class-I family protein C22A12.08c OS=Schizosacch... SPAC22A12.08c - cardiolipin synthase / hydrolase fusion protein	1.0E-55	[5..351]	[23..355]
gi\|18976804, gi\|... - gi\|18976804\|ref\|NP_578161.1\| putative sugar-catabolism phosphotransferase [Pyrococcus furiosus DSM 3...	1.0E-55	[16..348]	[5..262]

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Predicted Domain #1

Region A:
Residues: [1-181]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIGKRFFQTT SKKIAFAFDI DGVLFRGKKP IAGASDALKL LNRNKIPYIL LTNGGGFSER  60
   61 ARTEFISSKL DVDVSPLQII QSHTPYKSLV NKYSRILAVG TPSVRGVAEG YGFQDVVHQT 120
  121 DIVRYNRDIA PFSGLSDEQV MEYSRDIPDL TTKKFDAVLV FNDPHDWAAD IQIISDAINS 180
  181 E

[Run NCBI BLAST on this sequence.]

Detection Method:	ORFEUS
Confidence:	7.32
Match:	1mhsA
Description:	Proton ATPase
Matching Structure (courtesy of the PDB):

Predicted Domain #2

Region A:
Residues: [182-352]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NGMLNTLRNE KSGKPSIPIY FSNQDLLWAN PYKLNRFGQG AFRLLVRRLY LELNGEPLQD  60
   61 YTLGKPTKLT YDFAHHVLID WEKRLSGKIG QSVKQKLPLL GTKPSTSPFH AVFMVGDNPA 120
  121 SDIIGAQNYG WNSCLVKTGV YNEGDDLKEC KPTLIVNDVF DAVTKTLEKY A

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	3.522879
Match:	1qq6A_
Description:	L-2-Haloacid dehalogenase, HAD
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits