YRC Public Data Repository - Protein Structure Prediction

Protein:	BET3
Organism:	Saccharomyces cerevisiae
Length:	193 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for BET3.

Description	E-value	Query Range	Subject Range
gi\|114555735 - gi\|114555735\|ref\|XP_513093.2\| PREDICTED: similar to bet3 [Pan troglodytes]	320.0	[0..21]	[193..55]
gi\|60593497 - gi\|60593497\|pdb\|1SZ7\|A Chain A, Crystal Structure Of Human Bet3	316.0	[0..21]	[193..19]
TPPC3_CHICK - Trafficking protein particle complex subunit 3 OS=Gallus gallus GN=TRAPPC3 PE=2 SV=1	316.0	[0..21]	[193..10]
gi\|62901828 - gi\|62901828\|gb\|AAY18865.1\| bet3 [synthetic construct]	315.0	[0..21]	[193..21]
bet3 - TRAPP complex subunit Bet3 BET3_SCHPO - Transport protein particle subunit bet3 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=be...	315.0	[0..9]	[193..2]
TPPC3_MOUSE - Trafficking protein particle complex subunit 3 OS=Mus musculus GN=Trappc3 PE=1 SV=1 TPPC3_RAT - Trafficking protein particle complex subunit 3 OS=Rattus norvegicus GN=Trappc3 PE=2 SV=1	314.0	[0..21]	[193..10]
gi\|73977068 - gi\|73977068\|ref\|XP_539594.2\| PREDICTED: similar to trafficking protein particle complex 3 (predicted...	314.0	[0..21]	[193..10]
gi\|89271912, gi\|... - gi\|89271912\|emb\|CAJ83649.1\| trafficking protein particle complex 3 [Xenopus tropicalis], gi\|62857629...	310.0	[0..21]	[193..10]
gi\|63146086 - gi\|63146086\|gb\|AAY33977.1\| BET 3 [Oxyuranus scutellatus scutellatus]	310.0	[0..20]	[193..10]

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Predicted Domain #1

Region A:
Residues: [1-193]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVSTTQSRSL KAMGEEIWKN KTEKINTELF TLTYGSIVAQ LCQDYERDFN KVNDHLYSMG  60
   61 YNIGCRLIED FLARTALPRC ENLVKTSEVL SKCAFKIFLN ITPNITNWSH NKDTFSLILD 120
  121 ENPLADFVEL PMDAMKSLWY SNILCGVLKG SLEMVQLDCD VWFVSDILRG DSQTEIKVKL 180
  181 NRILKDEIPI GED

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	86.69897
Match:	1sz7A
Description:	Crystal structure of Human Bet3
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits