YRC Public Data Repository - Protein Structure Prediction

Protein:	GPT2
Organism:	Saccharomyces cerevisiae
Length:	743 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for GPT2.

Description	E-value	Query Range	Subject Range
gi\|16944705 - gi\|16944705\|emb\|CAC85390.1\| glycerol-3-phosphate acyltransferase [Saccharomyces cerevisiae]	864.0	[0..11]	[723..27]
SPBC1718.04 - glycerol-3-phosphate O-acyltransferase YOL4_SCHPO - Uncharacterized acyltransferase C1718.04 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=S...	788.0	[0..35]	[712..2]
gi\|49527888 - gi\|49527888\|emb\|CAG61539.1\| unnamed protein product [Candida glabrata] gi\|50292287, gi\|... - gi\|50292287\|ref\|XP_448576.1\| unnamed protein product [Candida glabrata], gi\|49527888\|emb\|CAG61539.1\|...	696.0	[0..16]	[741..4]
gi\|157878946, gi... - gi\|73747893\|ref\|NP_859435.2\| glycerol-3-phosphate acyltransferase, putative [Leishmania major strain... gi\|70798977 - gi\|70798977\|gb\|AAM68976.2\|AC125735_6 glycerol-3-phosphate acyltransferase, putative [Leishmania majo...	639.0	[0..36]	[610..58]
gi\|13177565, gi\|... - gi\|13177565\|gb\|AAG17947.1\| glycerol-3-phosphate acyltransferase [Plasmodium falciparum], gi\|13177559...	637.0	[0..37]	[614..2]
gi\|124805771, gi... - gi\|23508821\|ref\|NP_701489.1\| choline transporter [Plasmodium falciparum 3D7], gi\|23496657\|gb\|AAN3621... gi\|13177563, gi\|... - gi\|13177563\|gb\|AAK14818.1\| glycerol-3-phosphate acyltransferase [Plasmodium falciparum], gi\|13177561...	636.0	[0..37]	[614..2]
gi\|44985082 - gi\|44985082\|gb\|AAS53860.1\| AFR489Wp [Ashbya gossypii ATCC 10895] gi\|44985082, gi\|... - gi\|45199007\|ref\|NP_986036.1\| AFR489Wp [Ashbya gossypii ATCC 10895], gi\|44985082\|gb\|AAS53860.1\| AFR48...	603.0	[0..37]	[680..52]

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Predicted Domain #1

Region A:
Residues: [1-398]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSAPAADHNA AKPIPHVPQA SRRYKNSYNG FVYNIHTWLY DVSVFLFNIL FTIFFREIKV  60
   61 RGAYNVPEVG VPTILVCAPH ANQFIDPALV MSQTRLLKTS AGKSRSRMPC FVTAESSFKK 120
  121 RFISFFGHAM GGIPVPRIQD NLKPVDENLE IYAPDLKNHP EIIKGRSKNP QTTPVNFTKR 180
  181 FSAKSLLGLP DYLSNAQIKE IPDDETIILS SPFRTSKSKV VELLTNGTNF KYAEKIDNTE 240
  241 TFQSVFDHLH TKGCVGIFPE GGSHDRPSLL PIKAGVAIMA LGAVAADPTM KVAVVPCGLH 300
  301 YFHRNKFRSR AVLEYGEPIV VDGKYGEMYK DSPRETVSKL LKKITNSLFS VTENAPDYDT 360
  361 LMVIQAARRL YQPVKVRLPL PAIVEINRRL LFGYSKFK

[Run NCBI BLAST on this sequence.]

Detection Method:	ab initio
Confidence:	10.79
Match:
Description:	No description for 1k30A was found.

Predicted Domain #2

Region A:
Residues: [399-629]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DDPRIIHLKK LVYDYNRKLD SVGLKDHQVM QLKTTKLEAL RCFVTLIVRL IKFSVFAILS  60
   61 LPGSILFTPI FIICRVYSEK KAKEGLKKSL VKIKGTDLLA TWKLIVALIL APILYVTYSI 120
  121 LLIILARKQH YCRIWVPSNN AFIQFVYFYA LLVFTTYSSL KTGEIGVDLF KSLRPLFVSI 180
  181 VYPGKKIEEI QTTRKNLSLE LTAVCNDLGP LVFPDYDKLA TEIFSKRDGY D

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [630-743]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VSSDAESSIS RMSVQSRSRS SSIHSIGSLA SNALSRVNSR GSLTDIPIFS DAKQGQWKSE  60
   61 GETSEDEDEF DEKNPAIVQT ARSSDLNKEN SRNTNISSKI ASLVRQKREH EKKE

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits