YRC Public Data Repository - Protein Structure Prediction

Protein:	UTP30
Organism:	Saccharomyces cerevisiae
Length:	274 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for UTP30.

Description	E-value	Query Range	Subject Range
RL1D1_YEAST - Ribosome biogenesis protein UTP30 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=UTP30 ... UTP30 - Subunit of U3-containing 90S preribosome complex involved in production of 18S rRNA and assembly of ...	8.0E-55	[1..274]	[1..274]
gi\|73972666, gi\|... - gi\|73972666\|ref\|XP_532118.2\| PREDICTED: similar to ribosomal protein L10a isoform 1 [Canis familiari... ENSMMUG000000159... - null, null tr\|G1SKZ8\|G1SKZ8... - Ribosomal protein OS=Oryctolagus cuniculus GN=RPL10A PE=3 SV=2 RL10A_BOVIN - 60S ribosomal protein L10a OS=Bos taurus GN=RPL10A PE=2 SV=3 gi\|61355871, gi\|... - gi\|61355881\|gb\|AAX41186.1\| ribosomal protein L10a [synthetic construct], gi\|61355871\|gb\|AAX41185.1\| ... ENSCJAT00000030456 - null RPL10A - ribosomal protein L10a RL10A_RAT - 60S ribosomal protein L10a OS=Rattus norvegicus GN=Rpl10a PE=1 SV=2 tr\|M3WHU6\|M3WHU6... - Ribosomal protein OS=Felis catus GN=RPL10A PE=3 SV=1 gi\|148667795, gi... - gi\|74185403\|dbj\|BAE30175.1\| unnamed protein product [Mus musculus], gi\|74178048\|dbj\|BAE29816.1\| unna...	4.0E-48	[5..255]	[2..217]
RL10A_MOUSE - 60S ribosomal protein L10a OS=Mus musculus GN=Rpl10a PE=1 SV=3	1.0E-47	[5..255]	[2..217]
RL10A_ICTPU - 60S ribosomal protein L10a OS=Ictalurus punctatus GN=rpl10a PE=2 SV=1	4.0E-47	[5..255]	[1..216]
RL1_DEIRA - 50S ribosomal protein L1 OS=Deinococcus radiodurans GN=rplA PE=1 SV=1 RL1_DEIRA - 50S ribosomal protein L1 OS=Deinococcus radiodurans (strain ATCC 13939 / DSM 20539 / JCM 16871 / LMG...	1.0E-46	[7..254]	[14..225]
RL10A_SPOFR - 60S ribosomal protein L10a OS=Spodoptera frugiperda GN=RpL10A PE=2 SV=1	3.0E-46	[5..255]	[2..217]
RL1_THET2 - 50S ribosomal protein L1 OS=Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) GN=rplA PE=... RL1_THETH - 50S ribosomal protein L1 OS=Thermus thermophilus GN=rplA PE=1 SV=3 gi\|2120598 - pir\|\|S66577 ribosomal protein L1 - Thermus aquaticus (fragment)	4.0E-46	[5..254]	[12..225]
gi\|28373723\|pdb\|... - Chain d, Structure Of The E. Coli Ribosomal Termination Complex With Release Factor 2 gi\|66361020\|pdb\|... - Chain D, Crystal Structure Of 70s Ribosome With Thrs Operator And Trnas. Large Subunit. The Coordina... gi\|14278034 - gi\|14278034\|pdb\|1GIY\|D Chain D, Crystal Structure Of The Ribosome At 5.5 A Resolution. This File, 1g... gi\|28373723 - gi\|28373723\|pdb\|1ML5\|DD Chain d, Structure Of The E. Coli Ribosomal Termination Complex With Release... gi\|14278034, gi\|... - gi\|66361020\|pdb\|1YL3\|D Chain D, Crystal Structure Of 70s Ribosome With Thrs Operator And Trnas. Larg...	4.0E-46	[5..254]	[11..224]

Back

Predicted Domain #1

Region A:
Residues: [1-70]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVESNDIIKS GLAEKALKAL ILQCEENPSL KNDKDIHIII NTGKKMGINR DNIPRIIPLT  60
   61 KYKLFKPRDL

[Run NCBI BLAST on this sequence.]

Region B:
Residues: [166-274]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 QMVEKCDPIY VRAQLRSICK NTSYIPNNDN CLSVRVGYIQ KHSIPEILQN IQDTINFLTD  60
   61 KSKRPQGGVI KGGIISIFVK TSNSTSLPIY QFSEARENQK NEDLSDIKL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	47.0
Match:	1eg0N_
Description:	70S ribosome functional complex
Matching Structure (courtesy of the PDB):

Predicted Domain #2

Region A:
Residues: [71-165]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NILLITKDPS ALYRETLTKD EHTSELFKEI ISVKNLRRRF KGSKLTQLYK DFDLVVADYR  60
   61 VHHLLPEVLG SRFYHGSKKL PYMIRMSKEV KLKRQ

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	47.0
Match:	1eg0N_
Description:	70S ribosome functional complex
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits