YRC Public Data Repository - Protein Structure Prediction

Protein:	RPS21A
Organism:	Saccharomyces cerevisiae
Length:	87 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RPS21A.

Description	E-value	Query Range	Subject Range
gi\|190409370 - gi\|190409370\|gb\|EDV12635.1\| ribosomal protein S21B [Saccharomyces cerevisiae RM11-1a] gi\|151944991 - gi\|151944991\|gb\|EDN63246.1\| ribosomal protein S21B [Saccharomyces cerevisiae YJM789] RPS21B - Protein component of the small (40S) ribosomal subunit; nearly identical to Rps21Ap and has similari... RS21B_YEAST - 40S ribosomal protein S21-B OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RPS21B PE=1 ...	158.0	[0..1]	[87..1]
RS21_KLULA - 40S ribosomal protein S21 OS=Kluyveromyces lactis GN=RPS21 PE=3 SV=1 RS21_KLULA - 40S ribosomal protein S21 OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 12...	157.0	[0..1]	[87..1]
rps21 - 40S ribosomal protein S21 RS21_SCHPO - 40S ribosomal protein S21 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rps21 PE=1 SV=2	157.0	[0..1]	[87..1]
gi\|50758757 - gi\|50758757\|ref\|XP_417405.1\| PREDICTED: similar to ribosomal protein S21; 40S ribosomal protein S21 ...	156.0	[0..1]	[79..79]
RS21_ASHGO - 40S ribosomal protein S21 OS=Ashbya gossypii GN=RPS21 PE=3 SV=1 RS21_ASHGO - 40S ribosomal protein S21 OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-10...	156.0	[0..1]	[87..1]
RS21_CANGA - 40S ribosomal protein S21 OS=Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / N... RS21_CANGA - 40S ribosomal protein S21 OS=Candida glabrata GN=RPS21 PE=3 SV=1	155.0	[0..1]	[87..1]
gi\|238879371 - gi\|238879371\|gb\|EEQ43009.1\| conserved hypothetical protein [Candida albicans WO-1] RS21_CANAX - 40S ribosomal protein S21 OS=Candida albicans GN=RPS21 PE=3 SV=1	152.0	[0..1]	[87..1]
RS21_NEUCR - 40S ribosomal protein S21 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 12... RS21_NEUCR - 40S ribosomal protein S21 OS=Neurospora crassa GN=rps-21 PE=3 SV=1	152.0	[0..1]	[87..1]
gi\|46107830, gi\|... - gi\|46107830\|ref\|XP_380974.1\| RS21_NEUCR 40S ribosomal protein S21 (CRP7) [Gibberella zeae PH-1], gi\|...	152.0	[0..1]	[87..1]
gi\|88186326, gi\|... - gi\|88186326\|gb\|EAQ93794.1\| 40S ribosomal protein S21 [Chaetomium globosum CBS 148.51], gi\|116182802\|...	149.0	[0..1]	[87..1]

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Predicted Domain #1

Region A:
Residues: [1-87]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MENDKGQLVE LYVPRKCSAT NRIIKADDHA SVQINVAKVD EEGRAIPGEY VTYALSGYVR  60
   61 SRGESDDSLN RLAQNDGLLK NVWSYSR

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	64.142668
Match:	PF01249.9
Description:	No description for PF01249.9 was found.

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.543	N/A	N/A	a.39.1	EF-hand
View	Download	0.460	N/A	N/A	a.29.12	Description not found.
View	Download	0.416	N/A	N/A	d.87.2	CO dehydrogenase flavoprotein C-terminal domain-like
View	Download	0.414	N/A	N/A	a.52.1	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
View	Download	0.411	N/A	N/A	a.1.1	Globin-like
View	Download	0.409	N/A	N/A	b.38.5	Description not found.
View	Download	0.407	N/A	N/A	d.87.2	CO dehydrogenase flavoprotein C-terminal domain-like
View	Download	0.401	N/A	N/A	a.3.1	Cytochrome c
View	Download	0.390	N/A	N/A	d.120.1	Cytochrome b5

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits