| Protein: | TRK2 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 889 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for TRK2.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..889] | [1..889] |
|
|
0.0 | [6..875] | [4..880] |
|
|
0.0 | [38..876] | [42..862] |
|
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0.0 | [37..856] | [1..826] |
|
|
0.0 | [58..856] | [16..818] |
|
|
0.0 | [34..863] | [15..790] |
|
|
0.0 | [132..874] | [465..1213] |
|
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0.0 | [163..860] | [325..953] |
|
|
0.0 | [152..860] | [373..996] |
|
Region A: Residues: [1-95] |
1 11 21 31 41 51
| | | | | |
1 MPTAKRTSSR ASLALPFQLR LVHKKSWGHR LRDFISGFLK SCRPIAKYVF PNFIVVHYIY 60
61 LITLSIIGSI LLYPCKNTAF IDVLFLAAGA STQGG
|
| Detection Method: |  |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.440 | a.26.1 | 4-helical cytokines |
| View | Download | 0.533 | a.4.1 | Homeodomain-like |
| View | Download | 0.656 | d.96.1 | Tetrahydrobiopterin biosynthesis enzymes-like |
| View | Download | 0.477 | a.64.1 | Saposin |
| View | Download | 0.656 | d.96.1 | Tetrahydrobiopterin biosynthesis enzymes-like |
| View | Download | 0.618 | a.112.1 | Description not found. |
| View | Download | 0.618 | a.112.1 | Description not found. |
| View | Download | 0.533 | a.4.1 | Homeodomain-like |
| View | Download | 0.477 | a.64.1 | Saposin |
| View | Download | 0.440 | a.26.1 | 4-helical cytokines |
| View | Download | 0.440 | a.24.17 | Group V grass pollen allergen |
| View | Download | 0.399 | a.13.1 | alpha-2-Macroglobulin receptor associated protein (RAP) domain 1 |
| View | Download | 0.367 | a.24.7 | FKBP12-rapamycin-binding domain of FKBP-rapamycin-associated protein (FRAP) |
| View | Download | 0.357 | d.39.1 | Dynein light chain 8 (DLC8) |
| View | Download | 0.322 | a.159.1 | Protein serine/threonine phosphatase 2C, C-terminal domain |
| View | Download | 0.309 | a.45.1 | Glutathione S-transferase (GST), C-terminal domain |
| View | Download | 0.308 | g.53.1 | TAZ domain |
| View | Download | 0.303 | a.4.1 | Homeodomain-like |
| View | Download | 0.299 | a.118.8 | TPR-like |
| View | Download | 0.292 | a.1.1 | Globin-like |
| View | Download | 0.292 | a.69.3 | 1-deoxy-D-xylulose-5-phosphate reductoisomerase, C-terminal domain |
| View | Download | 0.289 | a.7.6 | Ribosomal protein S20 |
| View | Download | 0.288 | a.4.1 | Homeodomain-like |
| View | Download | 0.285 | b.40.1 | Staphylococcal nuclease |
| View | Download | 0.275 | a.100.1 | 6-phosphogluconate dehydrogenase C-terminal domain-like |
| View | Download | 0.262 | a.80.1 | DNA polymerase III clamp loader subunits, C-terminal domain |
| View | Download | 0.257 | a.45.1 | Glutathione S-transferase (GST), C-terminal domain |
| View | Download | 0.253 | a.4.6 | C-terminal effector domain of the bipartite response regulators |
| View | Download | 0.251 | a.1.1 | Globin-like |
| View | Download | 0.251 | a.100.1 | 6-phosphogluconate dehydrogenase C-terminal domain-like |
| View | Download | 0.249 | a.4.6 | C-terminal effector domain of the bipartite response regulators |
| View | Download | 0.247 | c.55.6 | DNA repair protein MutS, domain II |
| View | Download | 0.247 | a.118.1 | ARM repeat |
| View | Download | 0.243 | a.181.1 | Antibiotic binding domain of TipA-like multidrug resistance regulators |
| View | Download | 0.241 | a.5.6 | Hypothetical protein MTH1615 |
| View | Download | 0.241 | i.11.1 | Computational models partly based on NMR data |
| View | Download | 0.239 | f.34.1 | Mechanosensitive channel protein MscS (YggB), transmembrane region |
| View | Download | 0.220 | a.7.7 | BAG domain |
| View | Download | 0.220 | a.24.17 | Group V grass pollen allergen |
| View | Download | 0.218 | a.150.1 | Anti-sigma factor AsiA |
| View | Download | 0.218 | a.8.3 | Families 57/38 glycoside transferase middle domain |
| View | Download | 0.218 | a.24.16 | Nucleotidyltransferase substrate binding subunit/domain |
| View | Download | 0.217 | a.48.3 | Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 |
| View | Download | 0.204 | a.27.1 | Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases |
| View | Download | 0.202 | f.14.1 | Voltage-gated potassium channels |
| View | Download | 0.202 | a.27.1 | Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases |
|
Region A: Residues: [96-354] |
1 11 21 31 41 51
| | | | | |
1 LATKSTNDFN LYQQIVVYVI TLLSTPILIH GFLAFVRLYW FERYFDNIRD ISKQNFKLRR 60
61 TMTLQQRELS GSSGNAARSR SFKDNLFRGK FVSREDPRQS ASDVPMDSPD TSALSSISPL 120
121 NVSSSKEESS DTQSSPPNFS SKRQPSDVDP RDIYKSIMML QKQQEKSNAN STDSFSSETN 180
181 GPAFIVQERH ERRAPHCSLK RHSVLPSSQE LNKLAQTKSF QKLLGLRRDE GDHDYFDGAP 240
241 HKYMVTKKKK ISRTQSCNI
|
| Detection Method: | |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [355-889] |
1 11 21 31 41 51
| | | | | |
1 PTYTASPSPK TSGQVVENHR NLAKSAPSSF VDEEMSFSPQ ESLNLQFQAH PPKPKRREGD 60
61 IGHPFTRTMS TNYLSWQPTF GRNSVFIGLT KQQKEELGGV EYRALRLLCC ILMVYYIGFN 120
121 ILAFVTIVPW ACTRHHYSEI IRRNGVSPTW WGFFTAMSAF SNLGLSLTAD SMVSFDTAPY 180
181 PLIFMMFFII IGNTGFPIML RFIIWIMFKT SRDLSQFKES LGFLLDHPRR CFTLLFPSGP 240
241 TWWLFTTLVV LNATDWILFI ILDFNSAVVR QVAKGYRALM GLFQSVCTRT AGFNVVDLSK 300
301 LHPSIQVSYM LMMYVSVLPL AISIRRTNVY EEQSLGLYDS GQDDENITHE DDIKETDHDG 360
361 ESEERDTVST KSKPKKQSPK SFVGAHLRRQ LSFDLWYLFL GLFIICICEG RKIEDVNKPD 420
421 FNVFAILFEV VSAYGTVGLS LGYPNTNTSL SAQFTVLSKL VIIAMLIRGR NRGLPYTLDR 480
481 AIMLPSDKLE QIDRLQDMKA KGKLLAKVGE DPMTTYVKKR SHKLKKIATK FWGKH
|
| Detection Method: | |
| Confidence: | 189.823909 |
| Match: | PF02386 |
| Description: | Cation transport protein |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [659-889] |
1 11 21 31 41 51
| | | | | |
1 IQVSYMLMMY VSVLPLAISI RRTNVYEEQS LGLYDSGQDD ENITHEDDIK ETDHDGESEE 60
61 RDTVSTKSKP KKQSPKSFVG AHLRRQLSFD LWYLFLGLFI ICICEGRKIE DVNKPDFNVF 120
121 AILFEVVSAY GTVGLSLGYP NTNTSLSAQF TVLSKLVIIA MLIRGRNRGL PYTLDRAIML 180
181 PSDKLEQIDR LQDMKAKGKL LAKVGEDPMT TYVKKRSHKL KKIATKFWGK H
|
| Detection Method: | |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
