| Protein: | GAP1 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 602 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for GAP1.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..602] | [1..602] |
|
|
0.0 | [4..601] | [9..608] |
|
|
0.0 | [42..602] | [19..582] |
|
|
0.0 | [4..602] | [9..609] |
|
Region A: Residues: [1-70] |
1 11 21 31 41 51
| | | | | |
1 MSNTSSYEKN NPDNLKHNGI TIDSEFLTQE PITIPSNGSA VSIDETGSGS KWQDFKDSFK 60
61 RVKPIEVDPN
|
| Detection Method: |  |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.463 | d.58.1 | 4Fe-4S ferredoxins |
| View | Download | 0.454 | d.58.17 | Metal-binding domain |
| View | Download | 0.528 | d.58.3 | Protease propeptides/inhibitors |
| View | Download | 0.408 | d.58.49 | YajQ-like |
| View | Download | 0.462 | d.58.1 | 4Fe-4S ferredoxins |
| View | Download | 0.389 | a.60.11 | Hypothetical protein YjbJ |
| View | Download | 0.375 | d.141.1 | Ribosomal protein L6 |
| View | Download | 0.372 | d.9.2 | Description not found. |
| View | Download | 0.346 | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.343 | d.58.5 | GlnB-like |
| View | Download | 0.322 | d.58.24 | CheY-binding domain of CheA |
| View | Download | 0.317 | d.58.17 | Metal-binding domain |
| View | Download | 0.307 | d.45.1 | ClpS-like |
| View | Download | 0.301 | d.58.3 | Protease propeptides/inhibitors |
| View | Download | 0.297 | d.58.10 | Acylphosphatase-like |
| View | Download | 0.245 | d.58.18 | Regulatory domain in the aminoacid metabolism |
| View | Download | 0.240 | d.58.4 | Dimeric alpha+beta barrel |
| View | Download | 0.237 | d.58.3 | Protease propeptides/inhibitors |
| View | Download | 0.229 | d.58.5 | GlnB-like |
| View | Download | 0.224 | d.58.18 | Regulatory domain in the aminoacid metabolism |
|
Region A: Residues: [71-602] |
1 11 21 31 41 51
| | | | | |
1 LSEAEKVAII TAQTPLKHHL KNRHLQMIAI GGAIGTGLLV GSGTALRTGG PASLLIGWGS 60
61 TGTMIYAMVM ALGELAVIFP ISGGFTTYAT RFIDESFGYA NNFNYMLQWL VVLPLEIVSA 120
121 SITVNFWGTD PKYRDGFVAL FWLAIVIINM FGVKGYGEAE FVFSFIKVIT VVGFIILGII 180
181 LNCGGGPTGG YIGGKYWHDP GAFAGDTPGA KFKGVCSVFV TAAFSFAGSE LVGLAASESV 240
241 EPRKSVPKAA KQVFWRITLF YILSLLMIGL LVPYNDKSLI GASSVDAAAS PFVIAIKTHG 300
301 IKGLPSVVNV VILIAVLSVG NSAIYACSRT MVALAEQRFL PEIFSYVDRK GRPLVGIAVT 360
361 SAFGLIAFVA ASKKEGEVFN WLLALSGLSS LFTWGGICIC HIRFRKALAA QGRGLDELSF 420
421 KSPTGVWGSY WGLFMVIIMF IAQFYVAVFP VGDSPSAEGF FEAYLSFPLV MVMYIGHKIY 480
481 KRNWKLFIPA EKMDIDTGRR EVDLDLLKQE IAEEKAIMAT KPRWYRIWNF WC
|
| Detection Method: | |
| Confidence: | 279.721246 |
| Match: | PF00324 |
| Description: | Amino acid permease |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
