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View Structure Prediction Details

Protein: SPC34
Organism: Saccharomyces cerevisiae
Length: 295 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPC34.

Description E-value Query
Range
Subject
Range
SPC34 - Essential subunit of the Dam1 complex (aka DASH complex), couples kinetochores to the force produced...
SPC34_YEAST - DASH complex subunit SPC34 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SPC34 PE=1 SV...
gi|190409856 - gi|190409856|gb|EDV13121.1| DASH complex subunit SPC34 [Saccharomyces cerevisiae RM11-1a]
gi|151941579 - gi|151941579|gb|EDN59942.1| spindle pole component [Saccharomyces cerevisiae YJM789]
gi|207343388 - gi|207343388|gb|EDZ70859.1| YKR037Cp-like protein [Saccharomyces cerevisiae AWRI1631]
0.0 [1..295] [1..295]

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Predicted Domain #1
Region A:
Residues: [1-295]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGESLDRCID DINRAVDSMS TLYFKPPGIF HNAILQGASN KASIRKDITR LIKDCNHDEA  60
   61 YLLFKVNPEK QSVSRRDGKE GVFDYVIKRD TDMKRNRRLG RPGEKPIIHV PKEVYLNKDR 120
  121 LDLNNKRRRT ATTSGGGLNG FIFDTDLIGS SVISNSSSGT FKALSAVFKD DPQIQRLLYA 180
  181 LENGSVLMEE ESNNQRRKTI FVEDFPTDLI LKVMAEVTDL WPLTEFKQDY DQLYHNYEQL 240
  241 SSKLRFIKKE VLLQDDRLKT MSQYHPSSSH DVAKIIRKEK DEIRRLEMEI ANLQE

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle