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View Structure Prediction Details

Protein: YKR033C
Organism: Saccharomyces cerevisiae
Length: 141 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YKR033C.

Description E-value Query
Range
Subject
Range
gi|2131122 - gi|2131122|emb|CAA82108.1| unnamed protein product [Saccharomyces cerevisiae]
224.0 [0..1] [135..1]

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Predicted Domain #1
Region A:
Residues: [1-141]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDPLTINFSR IETFGLFVGN EPPPVVSSLF FLLNILFGSL EWVLALVFTL LLFSFFLFLD  60
   61 LMVSVFKLIG LGSPCNFRKR PHALQRTVPC SSLLHRGVLT VKQFWHVGWS SPSQSSTPAA 120
  121 AESVGEGSFN ESLSTILLYI I

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

    MCM
Score
SCOP
Match
SCOP Description
View Download 0.750 a.216.1 Description not found.
View Download 0.716 a.24.9 alpha-catenin/vinculin
View Download 0.627 f.56.1 Description not found.
View Download 0.619 a.24.9 alpha-catenin/vinculin
View Download 0.608 f.36.1 Neurotransmitter-gated ion-channel pransmembrane pore
View Download 0.608 f.36.1 Neurotransmitter-gated ion-channel pransmembrane pore
View Download 0.536 a.24.9 alpha-catenin/vinculin
View Download 0.535 a.24.9 alpha-catenin/vinculin
View Download 0.511 a.24.9 alpha-catenin/vinculin
View Download 0.502 a.80.1 DNA polymerase III clamp loader subunits, C-terminal domain


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle