YRC Public Data Repository - Protein Structure Prediction

Protein:	GMH1
Organism:	Saccharomyces cerevisiae
Length:	273 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for GMH1.

Description	E-value	Query Range	Subject Range
gi\|190409851 - gi\|190409851\|gb\|EDV13116.1\| conserved hypothetical protein [Saccharomyces cerevisiae RM11-1a] GMH1_YEAST - Protein GMH1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=GMH1 PE=1 SV=1 GMH1 - Golgi membrane protein of unknown function, interacts with Gea1p and Gea2p; required for localizatio... gi\|151941574 - gi\|151941574\|gb\|EDN59937.1\| gea1-6 membrane-associated high-copy suppressor [Saccharomyces cerevisia...	1.0E-93	[1..273]	[1..273]
gi\|114579090, gi... - gi\|55598910\|ref\|XP_515641.1\| PREDICTED: unc-50 homolog isoform 6 [Pan troglodytes], gi\|114579095\|ref... UNC50 - unc-50 homolog (C. elegans)	3.0E-80	[11..273]	[2..256]
UNC50_MOUSE - Protein unc-50 homolog OS=Mus musculus GN=Unc50 PE=2 SV=1	9.0E-78	[11..273]	[2..256]
UNC50_RAT - Protein unc-50 homolog OS=Rattus norvegicus GN=Unc50 PE=1 SV=1	1.0E-77	[11..273]	[2..256]
MUG16_SCHPO - Protein GMH1 homolog OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=mug16 PE=1 SV=1 mug16 - UNC-50 family protein	1.0E-65	[44..266]	[10..224]
CG9773-PA - This gene is referred to in FlyBase by the symbol Dmel\CG9773 (CG9773, FBgn0037609). It is a protein... gi\|220948134, gi... - gi\|220957294\|gb\|ACL91190.1\| CG9773-PA [synthetic construct], gi\|220948134\|gb\|ACL86610.1\| CG9773-PA [...	4.0E-62	[34..273]	[44..269]
gi\|18397766, gi\|... - gi\|20197743\|gb\|AAD25568.2\| expressed protein [Arabidopsis thaliana], gi\|18397766\|ref\|NP_565370.1\| UN...	3.0E-57	[15..272]	[3..245]

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Predicted Domain #1

Region A:
Residues: [1-273]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSYLPTYSND LPAGPQGQRR RNNGNENDAR QGYGQQSVPM VIRRLFKTPK NLDLETASWE  60
   61 MFHLIFHPRK AYRSIYYQRQ TKNQWARDDP SFFIFQIALI SLSSIIWSIY NSGFNNDSDM 120
  121 GALSIIGHFF KSLVMMVILD FFIFGFIMAT IFYLLLNRSH FKFKSSQNSV VEWAYCFDVH 180
  181 CNSFLIILLC LYFIQFLLLP IINLQNWISL LIGNSLYCFA IGHYFILTFY GYNQLPFLKN 240
  241 LNFILLPTLG LSIIYLISLF GIDLSKKLSF YNY

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits