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View Structure Prediction Details

Protein: RPC37
Organism: Saccharomyces cerevisiae
Length: 282 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RPC37.

Description E-value Query
Range
Subject
Range
RPC5_YEAST - DNA-directed RNA polymerase III subunit RPC5 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c...
gi|207343402 - gi|207343402|gb|EDZ70871.1| YKR025Wp-like protein [Saccharomyces cerevisiae AWRI1631]
RPC37 - RNA polymerase III subunit C37
0.0 [1..282] [1..282]
rpc37 - DNA-directed RNA polymerase III complex subunit Rpc37
RPC5_SCHPO - DNA-directed RNA polymerase III subunit rpc5 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) ...
6.0E-67 [48..240] [5..202]
gi|15240503, gi|... - gi|15240503|ref|NP_199764.1| SIN-like family protein [Arabidopsis thaliana], gi|10177619|dbj|BAB1076...
2.0E-58 [48..239] [92..286]
gi|7959163 - gi|7959163|dbj|BAA95976.1| KIAA1452 protein [Homo sapiens]
2.0E-55 [65..244] [44..261]
Sin-PA - The gene Sex-lethal interactor is referred to in FlyBase by the symbol Dmel\Sin (CG10582, FBgn002840...
6.0E-52 [64..239] [2..207]
gi|9858778 - gi|9858778|gb|AAG01125.1|AF273333_10 BAC19.10 [Lycopersicon esculentum]
2.0E-48 [49..192] [81..220]
gi|12836675 - gi|12836675|dbj|BAB23761.1| unnamed protein product [Mus musculus]
3.0E-39 [65..244] [4..195]

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Predicted Domain #1
Region A:
Residues: [1-282]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSIDNKLFVT EEDEEDRTQD RADVEDESND IDMIADENGT NSAIANEQEE KSEEVKAEDD  60
   61 TGEEEEDDPV IEEFPLKISG EEESLHVFQY ANRPRLVGRK PAEHPFISAA RYKPKSHLWE 120
  121 IDIPLDEQAF YNKDKAESEW NGVNVQTLKG VGVENNGQYA AFVKDMQVYL VPIERVAQLK 180
  181 PFFKYIDDAN VTRKQEDARR NPNPSSQRAQ VVTMSVKSVN DPSQNRLTGS LLAHKVADEE 240
  241 ANIELTWAEG TFEQFKDTIV KEAEDKTLVA LEKQEDYIDN LV

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle