YRC Public Data Repository - Protein Structure Prediction

Protein:	NTR2
Organism:	Saccharomyces cerevisiae
Length:	322 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for NTR2.

Description	E-value	Query Range	Subject Range
NTR2 - Essential protein that forms a dimer with Ntr1p; also forms a trimer, with Ntr2p and the DExD/H-box ... NTR2_YEAST - Pre-mRNA-splicing factor NTR2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=NTR2 PE=1 ...	0.0	[1..322]	[1..322]
gi\|253315465 - gi\|253315465\|ref\|ZP_04838678.1\| phage tail tape meausure protein [Staphylococcus aureus subsp. aureu... gi\|18920581, gi\|... - gi\|29028657\|ref\|NP_803346.1\| tail fiber protein [Staphylococcus phage phi 12], gi\|18920581\|gb\|AAL823... gi\|62636002, gi\|... - gi\|66395509\|ref\|YP_239871.1\| ORF001 [Staphylococcus phage 42E], gi\|62636002\|gb\|AAX91113.1\| ORF001 [B... gi\|88195239, gi\|... - gi\|88195239\|ref\|YP_500042.1\| phage tail tape meausure protein [Staphylococcus aureus subsp. aureus N...	9.0E-81	[8..258]	[931..1168]

Back

Predicted Domain #1

Region A:
Residues: [1-322]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAIKKRNKIR LPSGSPEEVG IDGSAHKPMQ QIKPLVSNDS EDDDNDICVL QPIKFKKVPK  60
   61 RDITFDGEQA IKEDNSHYED LYHSKKNTNA STRNKDDLLI LNMEDLMEGN HHLLSDSSEA 120
  121 GSSSEGEHIS SIPTRGEIAK LKAQKSLSRR KISESDVTTE RDYVKLLDSE DKREIMETIR 180
  181 LNGGLKRNNE KEITNFSDDE MQGFQDEMLA LTDNQIAIQK DSKRKIIEKA INEVPYRTNE 240
  241 EWETQLLSKG NINKSNEKII TPLPVLFPDD DESGNSIERI NEMVSKICLQ RKKVEMRLQA 300
  301 LEKTKIDLEK SKASLINKLI GN

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits