YRC Public Data Repository - Protein Structure Prediction

Protein:	PRY2
Organism:	Saccharomyces cerevisiae
Length:	329 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PRY2.

Description	E-value	Query Range	Subject Range
gi\|447739 - gi\|447739\|prf\|\|1915304A nylB upstream ORF	4.0E-57	[1..329]	[1..329]
PRY2_YEAST - Protein PRY2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=PRY2 PE=1 SV=1 gi\|190409835 - gi\|190409835\|gb\|EDV13100.1\| hypothetical protein SCRG_04032 [Saccharomyces cerevisiae RM11-1a] PRY2 - Protein of unknown function gi\|207343423 - gi\|207343423\|gb\|EDZ70885.1\| YKR013Wp-like protein [Saccharomyces cerevisiae AWRI1631]	4.0E-57	[1..329]	[1..329]
PR1C_TOBAC - Pathogenesis-related protein 1C OS=Nicotiana tabacum PE=2 SV=3	4.0E-54	[160..323]	[3..168]
gi\|1469932 - gi\|1469932\|gb\|AAB05225.1\| pathogenesis-related protein-1	8.0E-54	[162..323]	[5..168]
gi\|13560653, gi\|... - gi\|51980753\|gb\|AAU20808.1\| basic PR-1 protein precursor [Capsicum annuum], gi\|44890233\|gb\|AAC06244.2...	3.0E-53	[178..324]	[12..161]

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Predicted Domain #1

Region A:
Residues: [1-189]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKFSKVSLLA ASASVALSAP VAVTVTQHVH QAATVVVQGI VRVENGQTLT TFITKGTQTA  60
   61 SASPVATTSA PIVVANAQVD SIATSVIQES AVVAESATFE ESSTETSEAF STATATIQAV 120
  121 QTSASATQDD VTTTLTSSTQ PTSTTTPTTT TTSPTTTTSP TTTASPTTTA SPTTATTTQS 180
  181 TASSTQSSS

[Run NCBI BLAST on this sequence.]

Detection Method:	ORFEUS
Confidence:	13.38
Match:	1k83A
Description:	RBP1
Matching Structure (courtesy of the PDB):

Predicted Domain #2

Region A:
Residues: [190-329]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SDFSTSMVNE HNTKRALHKD TGSLTWSDTL ATYAQNYADS YDCSGNLVHS GGPYGENLAL  60
   61 GYGTTGSVDA WYNEITSYDY SNPGFSESAG HFTQVVWKGT SEVGCGLKSC GGEWGDYIIC 120
  121 SYKAAGNVIG EFADNVMPLA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	216.66807
Match:	1cfe__
Description:	Pathogenesis-related protein 1 (PR1)
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

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Top Sequence Alignment Hits