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View Structure Prediction Details

Protein: YKR012C
Organism: Saccharomyces cerevisiae
Length: 125 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YKR012C.

Description E-value Query
Range
Subject
Range
gi|2131120 - gi|2131120|emb|CAA82085.1| unnamed protein product [Saccharomyces cerevisiae]
75.0 [0..1] [52..1]

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Predicted Domain #1
Region A:
Residues: [1-125]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNVVRVWPFS TRTIPCTTTV AAWWTCCVTV TATGADKATD ADAASSETLE NFIFVSFIKG  60
   61 MVLFYDGLFR GTMIPRANRS ITAICNTLRQ AYIYTKIQSI AFERRLCFQN ITYREVREIH 120
  121 EMYCK

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

    MCM
Score
SCOP
Match
SCOP Description
View Download 0.557 a.118.1 ARM repeat
View Download 0.557 a.118.22 Description not found.
View Download 0.521 f.56.1 Description not found.
View Download 0.502 a.78.1 Fatty acid responsive transcription factor FadR, C-terminal domain
View Download 0.502 a.78.1 Fatty acid responsive transcription factor FadR, C-terminal domain
View Download 0.479 a.24.3 Cytochromes
View Download 0.479 a.24.3 Cytochromes
View Download 0.471 f.56.1 Description not found.
View Download 0.441 a.24.9 alpha-catenin/vinculin


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle