| Protein: | RSC4 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 625 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RSC4.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..625] | [1..625] |
|
|
4.0E-61 | [40..298] | [10..294] |
|
|
9.0E-55 | [18..303] | [1367..1638] |
|
|
2.0E-54 | [1..409] | [480..866] |
|
Region A: Residues: [1-163] |
1 11 21 31 41 51
| | | | | |
1 MVVKKRKLAT EAGGSDERPK YLPGKHPKNQ EKTPHVDYNA PLNPKSELFL DDWHIPKFNR 60
61 FISFTLDVLI DKYKDIFKDF IKLPSRKFHP QYYYKIQQPM SINEIKSRDY EYEDGPSNFL 120
121 LDVELLTKNC QAYNEYDSLI VKNSMQVVML IEFEVLKAKN LKR
|
| Detection Method: |  |
| Confidence: | 18.721246 |
| Match: | PF00439 |
| Description: | Bromodomain |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [164-338] |
1 11 21 31 41 51
| | | | | |
1 NYLINSEVKA KLLHYLNKLV DATEKKINQA LLGASSPKNL DDKVKLSEPF MELVDKDELP 60
61 EYYEIVHSPM ALSIVKQNLE IGQYSKIYDF IIDMLLVFQN AHIFNDPSAL IYKDATTLTN 120
121 YFNYLIQKEF FPELQDLNER GEINLEFDKF EFENYLAIGG GGPAAAGALA ISALD
|
| Detection Method: | |
| Confidence: | 126.512579 |
| Match: | 1e6iA_ |
| Description: | GCN5 |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [339-458] |
1 11 21 31 41 51
| | | | | |
1 NDIEPESNRE DLIDQADYDF NHFEGLGNGY NRSLLTEDYL LNPNNFKKLI AIPETVQSEV 60
61 KNERSTTSDI EKTNSLESEH LKIPKYNVIK SMQKEMQSLS EQHTMEYKPY KLIQQIYIFS 120
121
|
| Detection Method: | |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
| MCM Score |
GO Score |
GO Term |
SCOP Match |
SCOP Description | ||
| View | Download | 0.334 | N/A | N/A | a.1.1 | Globin-like |
| View | Download | 0.300 | N/A | N/A | d.58.26 | GHMP Kinase, C-terminal domain |
| View | Download | 0.277 | N/A | N/A | a.138.1 | Multiheme cytochromes |
| View | Download | 0.237 | N/A | N/A | c.84.1 | Phosphoglucomutase, first 3 domains |
| View | Download | 0.214 | N/A | N/A | a.25.2 | Thermoplasma ferritin-like 4-helical bundle |
| View | Download | 0.207 | N/A | N/A | f.36.1 | Neurotransmitter-gated ion-channel pransmembrane pore |
| View | Download | 0.205 | N/A | N/A | f.36.1 | Neurotransmitter-gated ion-channel pransmembrane pore |
|
Region A: Residues: [459-625] |
1 11 21 31 41 51
| | | | | |
1 SKNLYSQATK PLLGSRPSCN QNWVEYIFNG NELSQNENAF SFMLQPMQTF LTLQSHLTSS 60
61 LKDTETLLTI NKEPVKSRTS NVNSNLSQPQ QQENDVIGND TKQDIENLTI GGGNNNDIVG 120
121 NDNDKRNNIT EIFDIRLSEG LNHLMFRCED KISHETEFMN FWINVLP
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.300 | d.58.26 | GHMP Kinase, C-terminal domain |
| View | Download | 0.207 | f.36.1 | Neurotransmitter-gated ion-channel pransmembrane pore |
