YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: YKL225W
Organism: Saccharomyces cerevisiae
Length: 115 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YKL225W.

Description E-value Query
Range
Subject
Range
YFG3_YEAST - Putative UPF0320 protein YFL063W OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YFL063W...
YFL063W - [DUBIOUS] Dubious open reading frame, based on available experimental and comparative sequence data
158.0 [0..1] [115..28]

Back

Predicted Domain #1
Region A:
Residues: [1-115]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLRIYHSQLT LLSHSTPWPS LTKSVRCTHI IIHGTCLSGL YPVQFTHKTH DYPHFNIYIS  60
   61 FSGSKYCITA LNAYIIPLLL HILTIQFIHT YFNIPTKSPL KLPKHKNILL FNNNT

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 57.387216
Match: PF04318.3
Description: No description for PF04318.3 was found.

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

    MCM
Score
GO
Score
GO
Term
SCOP
Match
SCOP Description
View Download 0.567 N/A N/A d.58.4 Dimeric alpha+beta barrel
View Download 0.527 N/A N/A d.108.1 Acyl-CoA N-acyltransferases (Nat)
View Download 0.520 N/A N/A d.58.51 Description not found.
View Download 0.500 N/A N/A c.31.1 DHS-like NAD/FAD-binding domain
View Download 0.497 N/A N/A c.31.1 DHS-like NAD/FAD-binding domain
View Download 0.486 N/A N/A d.129.4 Cell-division protein ZipA, C-terminal domain
View Download 0.486 N/A N/A d.129.4 Cell-division protein ZipA, C-terminal domain
View Download 0.459 N/A N/A d.109.1 Actin depolymerizing proteins
View Download 0.449 N/A N/A b.84.2 Rudiment single hybrid motif


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle