YRC Public Data Repository - Protein Structure Prediction

Protein:	ACP1
Organism:	Saccharomyces cerevisiae
Length:	125 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ACP1.

Description	E-value	Query Range	Subject Range
gi\|7507776 - gi\|7507776\|pir\|\|T16867 probable cytochrome P450 T13C5.1 [similarity] - Caenorhabditis elegans	6.0E-23	[4..123]	[1912..2028]
gi\|15824140 - gi\|15824140\|dbj\|BAB69304.1\| modular polyketide synthase [Streptomyces avermitilis]	6.0E-22	[4..122]	[1594..1708]
gi\|12055082, gi\|... - gi\|4678703\|emb\|CAB41041.1\| polyketide synthase [Streptomyces natalensis], gi\|12055082\|emb\|CAC20931.1...	2.0E-21	[7..123]	[6594..6710]
gi\|4586928 - gi\|4586928\|dbj\|BAA76543.1\| polyketide synthase [Micromonospora griseorubida]	4.0E-21	[5..124]	[4078..4199]
gi\|2317862 - gi\|2317862\|gb\|AAB66506.1\| tylactone synthase modules 4 & 5 [Streptomyces fradiae]	4.0E-21	[7..125]	[3517..3635]
gi\|8050850 - gi\|8050850\|gb\|AAF71776.1\| NysC [Streptomyces noursei] gi\|8050850 - gi\|8050850\|gb\|AAF71776.1\|AF263912_15 NysC [Streptomyces noursei]	5.0E-21	[1..122]	[1613..1735]

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Predicted Domain #1

Region A:
Residues: [1-125]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFRSVCRISS RVAPSAYRTI MGRSVMSNTI LAQRFYSANL SKDQVSQRVI DVIKAFDKNS  60
   61 PNIANKQISS DTQFHKDLGL DSLDTVELLV AIEEEFDIEI PDKVADELRS VGETVDYIAS 120
  121 NPDAN

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	109.071898
Match:	1acp__
Description:	Acyl carrier protein
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits