| Protein: | TPO5 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 618 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for TPO5.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..618] | [1..618] |
|
|
8.0E-91 | [21..546] | [58..566] |
|
|
2.0E-88 | [27..521] | [14..470] |
|
|
1.0E-87 | [8..555] | [43..591] |
|
|
5.0E-87 | [27..521] | [2..458] |
|
Region A: Residues: [1-535] |
1 11 21 31 41 51
| | | | | |
1 MPEYTLLADN IRENIVHFDP NGLFDNLHTI VHEDDSQENE EAEHFNYDQV LDKSLLSRGS 60
61 IVGLGLGLMS PVLGMCTSMA IGLINGGPLT IMLGFLISGV CIWFSSLSLG EIVSKFPMEL 120
121 HVGSAMLAPE KLKLVCSWYT GWLMLIGNWT MSTSITFAGA QLTISLILMT NSNLISEAHL 180
181 IFYTVIVFYL VVTVVGLVNL KFARFIETIN KVCVYWIIYA IIFIDILLLV FHKGKFRSLK 240
241 YALFHFDNNL SGYKSAFLSF IIGFQQSNFT LQGFSMLPAL ADEVKVPEKD IPRGMSNAVL 300
301 LSAFSGVIFL IPIMLILPDN DLLFTNHKVL PIVNIFTKST DSVVLSFFLV LLILGNLLFS 360
361 GIGSITTSSR AVYSFSRDQA IPYYDKWTYV EPDSQSKVPK NSVVLSMIIS YFLGLLALIS 420
421 TAAFNAFIGA AVLCLCSATF IPLVLVLFTR RRAIRSAPVK IRYKFGWFIN IVSIVWLLLS 480
481 MVSVCLPTQV PVTFKTMNYA LMVYVFCILV ITGLYFKWGK YNFRLPLADD IKAPI
|
| Detection Method: |  |
| Confidence: | 170.823909 |
| Match: | PF00324 |
| Description: | Amino acid permease |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [536-618] |
1 11 21 31 41 51
| | | | | |
1 PSDAEETVFE LEDSNVEHTL NSGTTVKESV ENNSEEGFIK VHPKSSTENP FEENEENVIT 60
61 DYGDEHHTAE QEFDLADDRR YDI
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.457 | b.61.3 | D-aminopeptidase, middle and C-terminal domains |
| View | Download | 0.432 | d.93.1 | SH2 domain |
| View | Download | 0.422 | b.71.1 | Glycosyl hydrolase domain |
| View | Download | 0.350 | b.40.4 | Nucleic acid-binding proteins |
| View | Download | 0.338 | d.214.1 | Hypothetical protein MTH1880 |
| View | Download | 0.323 | d.87.1 | FAD/NAD-linked reductases, dimerisation (C-terminal) domain |
| View | Download | 0.314 | d.50.2 | Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain |
| View | Download | 0.310 | b.71.1 | Glycosyl hydrolase domain |
| View | Download | 0.308 | c.47.2 | RNA 3'-terminal phosphate cyclase, RPTC, insert domain |
| View | Download | 0.286 | d.10.1 | DNA-binding domain |
| View | Download | 0.278 | b.61.4 | Quinohemoprotein amine dehydrogenase A chain, domain 3 |
| View | Download | 0.258 | b.61.3 | D-aminopeptidase, middle and C-terminal domains |
| View | Download | 0.251 | d.82.2 | Frataxin-like |
| View | Download | 0.250 | d.93.1 | SH2 domain |
| View | Download | 0.245 | d.93.1 | SH2 domain |
| View | Download | 0.244 | d.52.7 | Ribosome-binding factor A, RbfA |
| View | Download | 0.220 | b.84.2 | Rudiment single hybrid motif |
| View | Download | 0.218 | d.16.1 | FAD-linked reductases, C-terminal domain |
| View | Download | 0.207 | d.129.1 | TATA-box binding protein-like |
| View | Download | 0.205 | d.16.1 | FAD-linked reductases, C-terminal domain |
| View | Download | 0.202 | b.40.9 | Heme chaperone CcmE |
