| Protein: | SNU114 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 1008 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SNU114.
| Description | E-value | Query Range |
Subject Range |
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0.0 | [118..994] | [4..842] |
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0.0 | [118..994] | [4..842] |
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0.0 | [118..994] | [4..856] |
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0.0 | [118..994] | [4..856] |
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0.0 | [118..994] | [4..856] |
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0.0 | [118..994] | [4..856] |
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0.0 | [118..994] | [4..856] |
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Region A: Residues: [1-113] |
1 11 21 31 41 51
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1 MEGDDLFDEF GNLIGVDPFD SDEEESVLDE QEQYQTNTFE GSGNNNEIES RQLTSLGSKK 60
61 ELGISLEHPY GKEVEVLMET KNTQSPQTPL VEPVTERTKL QEHTIFTQLK KNI
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| Detection Method: |  |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.423 | g.52.1 | Inhibitor of apoptosis (IAP) repeat |
| View | Download | 0.312 | a.24.16 | Nucleotidyltransferase substrate binding subunit/domain |
| View | Download | 0.377 | a.24.17 | Group V grass pollen allergen |
| View | Download | 0.593 | a.60.10 | Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain |
| View | Download | 0.454 | a.118.11 | Cytochrome c oxidase subunit E |
| View | Download | 0.593 | a.60.10 | Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain |
| View | Download | 0.454 | a.118.11 | Cytochrome c oxidase subunit E |
| View | Download | 0.423 | g.52.1 | Inhibitor of apoptosis (IAP) repeat |
| View | Download | 0.377 | a.24.17 | Group V grass pollen allergen |
| View | Download | 0.312 | a.24.16 | Nucleotidyltransferase substrate binding subunit/domain |
| View | Download | 0.286 | a.27.1 | Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases |
| View | Download | 0.283 | a.4.9 | Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 |
| View | Download | 0.235 | a.39.1 | EF-hand |
| View | Download | 0.232 | a.79.1 | Antitermination factor NusB |
| View | Download | 0.228 | a.165.1 | Myosin phosphatase inhibitor 17kDa protein, CPI-17 |
| View | Download | 0.208 | b.82.3 | cAMP-binding domain-like |
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Region A: Residues: [114-443] |
1 11 21 31 41 51
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1 PKTRYNRDYM LSMANIPERI INVGVIGPLH SGKTSLMDLL VIDSHKRIPD MSKNVELGWK 60
61 PLRYLDNLKQ EIDRGLSIKL NGSTLLCTDL ESKSRMINFL DAPGHVNFMD ETAVALAASD 120
121 LVLIVIDVVE GVTFVVEQLI KQSIKNNVAM CFVINKLDRL ILDLKLPPMD AYLKLNHIIA 180
181 NINSFTKGNV FSPIDNNIIF ASTKLGFTFT IKEFVSYYYA HSIPSSKIDD FTTRLWGSVY 240
241 YHKGNFRTKP FENVEKYPTF VEFILIPLYK IFSYALSMEK DKLKNLLRSN FRVNLSQEAL 300
301 QYDPQPFLKH VLQLIFRQQT GLVDAITRCY
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| Detection Method: | |
| Confidence: | 242.9794 |
| Match: | 1efgA_ |
| Description: | Elongation factor G (EF-G), domain II; Elongation factor G (EF-G), N-terminal (G) domain; Elongation factor G (EF-G), domain IV; Elongation factor G (EF-G) |
Matching Structure (courtesy of the PDB): |
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Region A: Residues: [444-589] |
1 11 21 31 41 51
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1 QPFELFDNKT AHLSIPGKST PEGTLWAHVL KTVDYGGAEW SLVRIYSGLL KRGDTVRILD 60
61 TSQSESRQKR QLHDISKTET SNEDEDEDDE TPSCEVEEIG LLGGRYVYPV HEAHKGQIVL 120
121 IKGISSAYIK SATLYSVKSK EDMKQL
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| Detection Method: | |
| Confidence: | 242.9794 |
| Match: | 1efgA_ |
| Description: | Elongation factor G (EF-G), domain II; Elongation factor G (EF-G), N-terminal (G) domain; Elongation factor G (EF-G), domain IV; Elongation factor G (EF-G) |
| Matching Structure (courtesy of the PDB): |
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Region A: Residues: [590-809] |
1 11 21 31 41 51
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1 KFFKPLDYIT EAVFKIVLQP LLPRELPKLL DALNKISKYY PGVIIKVEES GEHVILGNGE 60
61 LYMDCLLYDL RASYAKIEIK ISDPLTVFSE SCSNESFASI PVSNSISRLG EENLPGLSIS 120
121 VAAEPMDSKM IQDLSRNTLG KGQNCLDIDG IMDNPRKLSK ILRTEYGWDS LASRNVWSFY 180
181 NGNVLINDTL PDEISPELLS KYKEQIIQGF YWAVKEGPLA
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| Detection Method: | |
| Confidence: | 242.9794 |
| Match: | 1efgA_ |
| Description: | Elongation factor G (EF-G), domain II; Elongation factor G (EF-G), N-terminal (G) domain; Elongation factor G (EF-G), domain IV; Elongation factor G (EF-G) |
| Matching Structure (courtesy of the PDB): |
|
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Region A: Residues: [810-1008] |
1 11 21 31 41 51
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1 EEPIYGVQYK LLSISVPSDV NIDVMKSQII PLMKKACYVG LLTAIPILLE PIYEVDITVH 60
61 APLLPIVEEL MKKRRGSRIY KTIKVAGTPL LEVRGQVPVI ESAGFETDLR LSTNGLGMCQ 120
121 LYFWHKIWRK VPGDVLDKDA FIPKLKPAPI NSLSRDFVMK TRRRKGISTG GFMSNDGPTL 180
181 EKYISAELYA QLRENGLVP
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| Detection Method: | |
| Confidence: | 242.9794 |
| Match: | 1efgA_ |
| Description: | Elongation factor G (EF-G), domain II; Elongation factor G (EF-G), N-terminal (G) domain; Elongation factor G (EF-G), domain IV; Elongation factor G (EF-G) |
| Matching Structure (courtesy of the PDB): |
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