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View Structure Prediction Details

Protein: MRPL38
Organism: Saccharomyces cerevisiae
Length: 138 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for MRPL38.

Description E-value Query
Range
Subject
Range
RL14_SYNY3 - 50S ribosomal protein L14 OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=rplN PE=1 SV=1
gi|7440830 - pir||S77492 ribosomal protein L14 - Synechocystis sp. (strain PCC 6803)
RL14_SYNY3 - 50S ribosomal protein L14 OS=Synechocystis sp. (strain ATCC 27184 / PCC 6803 / N-1) GN=rplN PE=3 SV=...
2.0E-37 [1..138] [1..122]
gi|25295213 - pir||AF2331 50S ribosomal protein L14 [imported] - Nostoc sp. (strain PCC 7120)
RL14_NOSS1 - 50S ribosomal protein L14 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=rplN PE=3 SV=1
RL14_ANAVT - 50S ribosomal protein L14 OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=rplN PE=3 SV=1
2.0E-37 [1..138] [1..122]
gi|229524567, gi... - gi|229524567|ref|ZP_04413972.1| LSU ribosomal protein L14p (L23e) [Vibrio cholerae bv. albensis VL42...
gi|229606868, gi... - gi|229606868|ref|YP_002877516.1| LSU ribosomal protein L14p (L23e) [Vibrio cholerae MJ-1236], gi|229...
gi|254851126, gi... - gi|254851126|ref|ZP_05240476.1| 50S ribosomal protein L14 [Vibrio cholerae MO10], gi|254846831|gb|EE...
RL14_VIBC3 - 50S ribosomal protein L14 OS=Vibrio cholerae serotype O1 (strain ATCC 39541 / Classical Ogawa 395 / ...
RL14_VIBCH - 50S ribosomal protein L14 OS=Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961) G...
RL14_VIBCH - 50S ribosomal protein L14 OS=Vibrio cholerae GN=rplN PE=3 SV=1
RL14_VIBCM - 50S ribosomal protein L14 OS=Vibrio cholerae serotype O1 (strain M66-2) GN=rplN PE=3 SV=1
gi|229507362, gi... - gi|229507362|ref|ZP_04396867.1| LSU ribosomal protein L14p (L23e) [Vibrio cholerae BX 330286], gi|22...
gi|229509715, gi... - gi|229509715|ref|ZP_04399196.1| LSU ribosomal protein L14p (L23e) [Vibrio cholerae B33], gi|22935318...
gi|124113500, gi... - gi|153217558|ref|ZP_01951239.1| ribosomal protein L14 [Vibrio cholerae 1587], gi|124113500|gb|EAY323...
gi|229513509, gi... - gi|229513509|ref|ZP_04402973.1| LSU ribosomal protein L14p (L23e) [Vibrio cholerae TMA 21], gi|22934...
gi|229516839, gi... - gi|229516839|ref|ZP_04406285.1| LSU ribosomal protein L14p (L23e) [Vibrio cholerae RC9], gi|22934590...
gi|229521652, gi... - gi|229521652|ref|ZP_04411070.1| LSU ribosomal protein L14p (L23e) [Vibrio cholerae TM 11079-80], gi|...
3.0E-37 [1..138] [1..123]
gi|4007873 - gi|4007873|gb|AAC95313.1| ribosomal protein L14 [Spirogyra maxima]
4.0E-37 [1..138] [1..122]
RL14_MYCLE - 50S ribosomal protein L14 OS=Mycobacterium leprae GN=rplN PE=3 SV=1
RL14_MYCLE - 50S ribosomal protein L14 OS=Mycobacterium leprae (strain TN) GN=rplN PE=3 SV=1
7.0E-37 [1..138] [1..122]
gi|254594647, gi... - gi|254795247|ref|YP_003080084.1| 50S ribosomal subunit protein L14 [Escherichia coli O157:H7 str. TW...
gi|253975139, gi... - gi|254163238|ref|YP_003046346.1| 50S ribosomal protein L14 [Escherichia coli B str. REL606], gi|2539...
gi|226838977, gi... - gi|254038471|ref|ZP_04872527.1| 50S ribosomal protein [Escherichia sp. 1_1_43], gi|226838977|gb|EEH7...
gi|253979295, gi... - gi|254289988|ref|YP_003055736.1| 50S ribosomal protein L14 [Escherichia coli BL21(DE3)], gi|25397929...
gi|242378837, gi... - gi|251786564|ref|YP_003000868.1| hypothetical protein B21_03112 [Escherichia coli BL21], gi|24237883...
sp|B7UK34|RL14_ECO27 - 50S ribosomal protein L14 OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) GN=rplN PE=3 SV=1
RL14_ECOBW - 50S ribosomal protein L14 OS=Escherichia coli (strain K12 / MC4100 / BW2952) GN=rplN PE=3 SV=1
gi|226902304, gi... - gi|237703040|ref|ZP_04533521.1| 50S ribosomal subunit protein L14 [Escherichia sp. 3_2_53FAA], gi|22...
gi|227839585, gi... - gi|227883441|ref|ZP_04001246.1| 50S ribosomal protein L14 [Escherichia coli 83972], gi|227839585|gb|...
RL14_SHIBS - 50S ribosomal protein L14 OS=Shigella boydii serotype 4 (strain Sb227) GN=rplN PE=3 SV=1
gi|89110700, gi|... - gi|89110700|ref|AP_004480.1| 50S ribosomal subunit protein L14 [Escherichia coli str. K-12 substr. W...
RL14_SHISS - 50S ribosomal protein L14 OS=Shigella sonnei (strain Ss046) GN=rplN PE=3 SV=1
RL14_SHIDS - 50S ribosomal protein L14 OS=Shigella dysenteriae serotype 1 (strain Sd197) GN=rplN PE=3 SV=1
gi|75207943 - gi|75207943|ref|ZP_00708382.1| COG0093: Ribosomal protein L14 [Escherichia coli B171]
gi|75214886, gi|... - gi|75214886|ref|ZP_00713365.1| COG0093: Ribosomal protein L14 [Escherichia coli E110019], gi|1930715...
RL14_ECO24 - 50S ribosomal protein L14 OS=Escherichia coli O139:H28 (strain E24377A / ETEC) GN=rplN PE=3 SV=1
RL14_ECOHS - 50S ribosomal protein L14 OS=Escherichia coli O9:H4 (strain HS) GN=rplN PE=3 SV=1
gi|75255393, gi|... - gi|75255393|ref|ZP_00727205.1| COG0093: Ribosomal protein L14 [Escherichia coli E22], gi|193066479|r...
gi|75511188, gi|... - gi|75511188|ref|ZP_00733900.1| COG0093: Ribosomal protein L14 [Escherichia coli 53638], gi|188495309...
gi|191169741, gi... - gi|75226647|ref|ZP_00713645.1| COG0093: Ribosomal protein L14 [Escherichia coli B7A], gi|191169741|r...
gi|191174452, gi... - gi|75236320|ref|ZP_00720427.1| COG0093: Ribosomal protein L14 [Escherichia coli F11], gi|191174452|r...
gi|194421065, gi... - gi|83584667|ref|ZP_00923334.1| COG0093: Ribosomal protein L14 [Escherichia coli 101-1], gi|194440013...
RL14_SHIB3 - 50S ribosomal protein L14 OS=Shigella boydii serotype 18 (strain CDC 3083-94 / BS512) GN=rplN PE=3 S...
RL14_ECOLI - 50S ribosomal protein L14 - Escherichia coli
RL14_SHIF8 - 50S ribosomal protein L14 OS=Shigella flexneri serotype 5b (strain 8401) GN=rplN PE=3 SV=1
RL14_ECOL6 - 50S ribosomal protein L14 OS=Escherichia coli O6 GN=rplN PE=3 SV=1
RL14_ECOUT - 50S ribosomal protein L14 OS=Escherichia coli (strain UTI89 / UPEC) GN=rplN PE=3 SV=1
gi|15833429, gi|... - gi|15833429|ref|NP_312202.1| 50S ribosomal protein L14 [Escherichia coli O157:H7 str. Sakai], gi|133...
RL14_ESCF3 - 50S ribosomal protein L14 OS=Escherichia fergusonii (strain ATCC 35469 / DSM 13698 / CDC 0568-73) GN...
RL14_ECO8A - 50S ribosomal protein L14 OS=Escherichia coli O8 (strain IAI1) GN=rplN PE=3 SV=1
RL14_ECO45 - 50S ribosomal protein L14 OS=Escherichia coli O45:K1 (strain S88 / ExPEC) GN=rplN PE=3 SV=1
RL14_ECO81 - 50S ribosomal protein L14 OS=Escherichia coli O81 (strain ED1a) GN=rplN PE=3 SV=1
RL14_ECO55 - 50S ribosomal protein L14 OS=Escherichia coli (strain 55989 / EAEC) GN=rplN PE=3 SV=1
RL14_ECO7I - 50S ribosomal protein L14 OS=Escherichia coli O7:K1 (strain IAI39 / ExPEC) GN=rplN PE=3 SV=1
RL14_ECOLC - 50S ribosomal protein L14 OS=Escherichia coli (strain ATCC 8739 / DSM 1576 / Crooks) GN=rplN PE=3 SV...
RL14_ECOLU - 50S ribosomal protein L14 OS=Escherichia coli O17:K52:H18 (strain UMN026 / ExPEC) GN=rplN PE=3 SV=1
gi|157836102 - gi|157836102|pdb|2QOX|K Chain K, Crystal Structure Of The Bacterial Ribosome From Escherichia Coli I...
EG10875 - 50S ribosomal subunit protein L14 / 50S ribosomal subunit protein L14
gi|24053784, gi|... - gi|24114588|ref|NP_709098.1| 50S ribosomal protein L14 [Shigella flexneri 2a str. 301], gi|24053784|...
RL14_SHIFL - 50S ribosomal protein L14 OS=Shigella flexneri GN=rplN PE=3 SV=1
gi|30065389, gi|... - gi|30065389|ref|NP_839560.1| 50S ribosomal protein L14 [Shigella flexneri 2a str. 2457T], gi|3004365...
RL14_ECOL6 - 50S ribosomal protein L14 OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=rplN PE=...
RL14_ECOK1 - 50S ribosomal protein L14 OS=Escherichia coli O1:K1 / APEC GN=rplN PE=3 SV=1
EG10875 - 50S ribosomal subunit protein L14 / 50S ribosomal subunit protein L14
gi|124532010, gi... - gi|124532010|ref|ZP_01702045.1| ribosomal protein L14 [Escherichia coli B], gi|124498196|gb|EAY45718...
RL14_ECO57 - 50S ribosomal protein L14 OS=Escherichia coli O157:H7 GN=rplN PE=3 SV=1
gi|15803837, gi|... - gi|15803837|ref|NP_289871.1| 50S ribosomal protein L14 [Escherichia coli O157:H7 EDL933], gi|1251793...
RL14_ECODH - 50S ribosomal protein L14 OS=Escherichia coli (strain K12 / DH10B) GN=rplN PE=3 SV=1
gi|194435066, gi... - gi|194435066|ref|ZP_03067304.1| ribosomal protein L14 [Shigella dysenteriae 1012], gi|194416673|gb|E...
gi|195939859 - gi|195939859|ref|ZP_03085241.1| 50S ribosomal protein L14 [Escherichia coli O157:H7 str. EC4024]
gi|208734312, gi... - gi|208813035|ref|ZP_03254364.1| ribosomal protein L14 [Escherichia coli O157:H7 str. EC4045], gi|208...
gi|208821284, gi... - gi|208821284|ref|ZP_03261604.1| ribosomal protein L14 [Escherichia coli O157:H7 str. EC4042], gi|208...
RL14_ECO5E - 50S ribosomal protein L14 OS=Escherichia coli O157:H7 (strain EC4115 / EHEC) GN=rplN PE=3 SV=1
RL14_ECOSE - 50S ribosomal protein L14 OS=Escherichia coli (strain SE11) GN=rplN PE=3 SV=1
RL14_ECO27 - 50S ribosomal protein L14 OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) GN=rplN PE=3 SV=1
gi|217326500, gi... - gi|217326500|ref|ZP_03442584.1| ribosomal protein L14 [Escherichia coli O157:H7 str. TW14588], gi|21...
RL14_ECOSM - 50S ribosomal protein L14 OS=Escherichia coli (strain SMS-3-5 / SECEC) GN=rplN PE=3 SV=1
gi|187766797, gi... - gi|187776503|ref|ZP_02803180.2| ribosomal protein L14 [Escherichia coli O157:H7 str. EC4196], gi|187...
gi|188025273, gi... - gi|188025273|ref|ZP_02777261.2| ribosomal protein L14 [Escherichia coli O157:H7 str. EC4113], gi|188...
gi|189010794, gi... - gi|189010794|ref|ZP_02809368.2| ribosomal protein L14 [Escherichia coli O157:H7 str. EC4076], gi|188...
gi|189401812, gi... - gi|189401812|ref|ZP_02778082.2| ribosomal protein L14 [Escherichia coli O157:H7 str. EC4401], gi|189...
gi|189403233, gi... - gi|189403233|ref|ZP_02794180.2| ribosomal protein L14 [Escherichia coli O157:H7 str. EC4486], gi|189...
gi|189404588, gi... - gi|189404588|ref|ZP_02790550.2| ribosomal protein L14 [Escherichia coli O157:H7 str. EC4501], gi|189...
gi|189374531, gi... - gi|189404704|ref|ZP_02810132.2| ribosomal protein L14 [Escherichia coli O157:H7 str. EC869], gi|1893...
8.0E-37 [1..138] [1..123]
RK14_NEPOL - 50S ribosomal protein L14, chloroplastic OS=Nephroselmis olivacea GN=rpl14 PE=3 SV=1
1.0E-36 [1..138] [1..121]
gi|2446900 - gi|2446900|dbj|BAA22459.1| 50S ribosomal protein L14 [Synechococcus sp.]
RL14_SYNE7 - 50S ribosomal protein L14 OS=Synechococcus elongatus (strain PCC 7942) GN=rplN PE=3 SV=1
RL14_SYNP6 - 50S ribosomal protein L14 OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=rplN ...
1.0E-36 [1..138] [1..121]
tr|E9CQ03|E9CQ03... - 50S ribosomal protein L14 OS=Serratia symbiotica str. Tucson GN=rplN PE=3 SV=1
gi|632215 - gi|632215|pir||JC2276 ribosomal protein L14 - pea aphid symbiont bacterium
RL14_BUCAK - 50S ribosomal protein L14 OS=Buchnera aphidicola subsp. Acyrthosiphon kondoi GN=rplN PE=3 SV=1
1.0E-36 [1..138] [1..123]
RL14_SALDC - 50S ribosomal protein L14 OS=Salmonella dublin (strain CT_02021853) GN=rplN PE=3 SV=1
RL14_SALTI - 50S ribosomal protein L14 OS=Salmonella typhi GN=rplN PE=3 SV=1
RL14_SALPK - 50S ribosomal protein L14 OS=Salmonella paratyphi A (strain AKU_12601) GN=rplN PE=3 SV=1
RL14_SALG2 - 50S ribosomal protein L14 OS=Salmonella gallinarum (strain 287/91 / NCTC 13346) GN=rplN PE=3 SV=1
gi|199604914, gi... - gi|200387816|ref|ZP_03214428.1| ribosomal protein L14 [Salmonella enterica subsp. enterica serovar V...
RL14_PECAS - 50S ribosomal protein L14 OS=Pectobacterium atrosepticum (strain SCRI 1043 / ATCC BAA-672) GN=rplN P...
RL14_SALSV - 50S ribosomal protein L14 OS=Salmonella schwarzengrund (strain CVM19633) GN=rplN PE=3 SV=1
gi|16762853 - gi|16762853|ref|NP_458470.1| 50S ribosomal protein L14 [Salmonella enterica subsp. enterica serovar ...
gi|194458876, gi... - gi|194472512|ref|ZP_03078496.1| ribosomal protein L14 [Salmonella enterica subsp. enterica serovar K...
RL14_SALTY - 50S ribosomal protein L14 OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) GN=rplN PE...
gi|197262624, gi... - gi|197262624|ref|ZP_03162698.1| ribosomal protein L14 [Salmonella enterica subsp. enterica serovar S...
gi|29144340, gi|... - gi|29144340|ref|NP_807682.1| 50S ribosomal protein L14 [Salmonella enterica subsp. enterica serovar ...
RL14_SALA4 - 50S ribosomal protein L14 OS=Salmonella agona (strain SL483) GN=rplN PE=3 SV=1
gi|195628903, gi... - gi|195628903|gb|EDX48313.1| ribosomal protein L14 [Salmonella enterica subsp. enterica serovar Newpo...
gi|205346886, gi... - gi|205346886|gb|EDZ33517.1| ribosomal protein L14 [Salmonella enterica subsp. enterica serovar Hadar...
RL14_SALHS - 50S ribosomal protein L14 OS=Salmonella heidelberg (strain SL476) GN=rplN PE=3 SV=1
RL14_SALNS - 50S ribosomal protein L14 OS=Salmonella newport (strain SL254) GN=rplN PE=3 SV=1
gi|228557856, gi... - gi|228557856|gb|EEK22521.1| hypothetical protein CIT292_00487 [Citrobacter youngae ATCC 29220], gi|2...
gi|226909267, gi... - gi|237728645|ref|ZP_04559126.1| 50S ribosomal subunit protein L14 [Citrobacter sp. 30_2], gi|2269092...
gi|227115262 - gi|227115262|ref|ZP_03828918.1| 50S ribosomal protein L14 [Pectobacterium carotovorum subsp. brasili...
tr|M3AP45|M3AP45... - 50S ribosomal protein L14 OS=Serratia marcescens WW4 GN=rplN PE=3 SV=1, 50S ribosomal protein L14 OS...
gi|227328939 - gi|227328939|ref|ZP_03832963.1| 50S ribosomal protein L14 [Pectobacterium carotovorum subsp. carotov...
gi|254987342, gi... - gi|255056857|ref|ZP_05309058.1| ribosomal protein L14 [Pectobacterium wasabiae WPP163], gi|254987342...
gi|213999774 - gi|213999774|ref|ZP_03410509.1| 50S ribosomal protein L14 [Salmonella enterica subsp. enterica serov...
gi|238913855 - gi|238913855|ref|ZP_04657692.1| 50S ribosomal protein L14 [Salmonella enterica subsp. enterica serov...
RL14_PECCP - 50S ribosomal protein L14 OS=Pectobacterium carotovorum subsp. carotovorum (strain PC1) GN=rplN PE=3...
gi|213612419 - gi|213612419|ref|ZP_03370245.1| 50S ribosomal protein L14 [Salmonella enterica subsp. enterica serov...
gi|213581218 - gi|213581218|ref|ZP_03363044.1| 50S ribosomal protein L14 [Salmonella enterica subsp. enterica serov...
gi|213852170 - gi|213852170|ref|ZP_03381702.1| 50S ribosomal protein L14 [Salmonella enterica subsp. enterica serov...
gi|213646534 - gi|213646534|ref|ZP_03376587.1| 50S ribosomal protein L14 [Salmonella enterica subsp. enterica serov...
gi|213027343 - gi|213027343|ref|ZP_03341790.1| 50S ribosomal protein L14 [Salmonella enterica subsp. enterica serov...
RL14_SALEP - 50S ribosomal protein L14 OS=Salmonella enteritidis PT4 (strain P125109) GN=rplN PE=3 SV=1
gi|213418136 - gi|213418136|ref|ZP_03351202.1| 50S ribosomal protein L14 [Salmonella enterica subsp. enterica serov...
gi|213161932 - gi|213161932|ref|ZP_03347642.1| 50S ribosomal protein L14 [Salmonella enterica subsp. enterica serov...
RL14_SALCH - 50S ribosomal protein L14 OS=Salmonella choleraesuis (strain SC-B67) GN=rplN PE=3 SV=1
RL14_SALPA - 50S ribosomal protein L14 OS=Salmonella paratyphi A (strain ATCC 9150 / SARB42) GN=rplN PE=3 SV=1
RL14_SALPB - 50S ribosomal protein L14 OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7) GN=rplN PE=3 SV=2
RL14_SALAR - 50S ribosomal protein L14 OS=Salmonella arizonae (strain ATCC BAA-731 / CDC346-86 / RSK2980) GN=rplN...
RL14_SALCH - 50S ribosomal protein L14 OS=Salmonella choleraesuis GN=rplN PE=3 SV=1
RL14_SALCH - 50S ribosomal protein L14 OS=Salmonella choleraesuis GN=rplN PE=3 SV=1
RL14_ERWCT - 50S ribosomal protein L14 OS=Erwinia carotovora subsp. atroseptica GN=rplN PE=3 SV=1
RL14_SALPA - 50S ribosomal protein L14 OS=Salmonella paratyphi A GN=rplN PE=3 SV=1
RL14_SALTI - 50S ribosomal protein L14 OS=Salmonella typhi GN=rplN PE=3 SV=1
RL14_SALTY - 50S ribosomal protein L14 OS=Salmonella typhimurium GN=rplN PE=3 SV=1
RL14_SALPB - 50S ribosomal protein L14 OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7) GN=rplN PE=3 SV=2
RL14_SALTY - 50S ribosomal protein L14 OS=Salmonella typhimurium GN=rplN PE=3 SV=1
tr|D4DYF1|D4DYF1... - 50S ribosomal protein L14 OS=Serratia odorifera DSM 4582 GN=rplN PE=3 SV=1
lcl|NC_016856.1_... - [gene=rplN] [protein=50S ribosomal protein L14] [protein_id=YP_005239620.1] [location=complement(360...
2.0E-36 [1..138] [1..123]

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Predicted Domain #1
Region A:
Residues: [1-138]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIFLKSVIKV IDNSGAQLAE CIKVIRKGSP KSPAMVGDRI VCVIQKAKPL TQNITGTANT  60
   61 NRVKKGDICH AIVVRSKQRN MCRKDGSTVA FGDTACVLIN KNTGEPLGTR IMANDGCVDR 120
  121 TLKDKGYNKI CSLASRVI

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 166.09691
Match: 487dM_
Description: 50S subunit
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
structural constituent of ribosome 10.0077098174023 bayes_pls_golite062009
structural molecule activity 9.43117206427219 bayes_pls_golite062009
binding 1.19249144486008 bayes_pls_golite062009
protein binding 0.555364167462951 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle