YRC Public Data Repository - Protein Structure Prediction

Protein:	MRP49
Organism:	Saccharomyces cerevisiae
Length:	137 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for MRP49.

Description	E-value	Query Range	Subject Range
gi\|49529024\|emb\|... - unnamed protein product [Candida glabrata CBS 138] gi\|49529024, gi\|... - gi\|50294598\|ref\|XP_449710.1\| hypothetical protein CAGL0M08382g [Candida glabrata CBS138], gi\|4952902...	166.0	[0..1]	[135..1]
gi\|32415219, gi\|... - gi\|32415219\|ref\|XP_328089.1\| related to ribosomal protein MRP49 [MIPS] [Neurospora crassa], gi\|28917... gi\|85079010 - gi\|85079010\|ref\|XP_956272.1\| related to ribosomal protein MRP49 [MIPS] [Neurospora crassa OR74A]	159.0	[0..27]	[116..102]
gi\|16944669 - gi\|16944669\|emb\|CAB99177.2\| related to ribosomal protein MRP49 [Neurospora crassa]	158.0	[0..27]	[116..44]
gi\|49640982 - gi\|49640982\|emb\|CAH02243.1\| KLLA0B07183p [Kluyveromyces lactis] gi\|49640982, gi\|... - gi\|50303807\|ref\|XP_451850.1\| unnamed protein product [Kluyveromyces lactis], gi\|49640982\|emb\|CAH0224...	153.0	[0..1]	[130..1]
gi\|44983433 - gi\|44983433\|gb\|AAS52569.1\| AEL116Cp [Ashbya gossypii ATCC 10895] gi\|44983433, gi\|... - gi\|45190491\|ref\|NP_984745.1\| AEL116Cp [Ashbya gossypii ATCC 10895], gi\|44983433\|gb\|AAS52569.1\| AEL11...	148.0	[0..1]	[130..1]
gi\|88176457, gi\|... - gi\|88176457\|gb\|EAQ83925.1\| hypothetical protein CHGG_10329 [Chaetomium globosum CBS 148.51], gi\|1162...	111.0	[0..21]	[137..21]
gi\|49656855, gi\|... - gi\|50425189\|ref\|XP_461186.1\| hypothetical protein DEHA0F20636g [Debaryomyces hansenii CBS767], gi\|49... gi\|49656855 - gi\|49656855\|emb\|CAG89574.1\| DEHA2F19360p [Debaryomyces hansenii]	71.0	[0..2]	[134..16]
gi\|159124711 - gi\|159124711\|gb\|EDP49829.1\| 50S ribosomal protein Mrp49 [Aspergillus fumigatus A1163] gi\|70992583, gi\|... - gi\|70992583\|ref\|XP_751140.1\| 50S ribosomal protein Mrp49 [Aspergillus fumigatus Af293], gi\|66848773\|...	68.0	[0..16]	[109..32]
gi\|115389864, gi... - gi\|115389864\|ref\|XP_001212437.1\| predicted protein [Aspergillus terreus NIH2624], gi\|114194833\|gb\|EA...	67.0	[0..15]	[109..31]
gi\|49092754, gi\|... - gi\|67526487\|ref\|XP_661305.1\| hypothetical protein AN3701.2 [Aspergillus nidulans FGSC A4], ref\|XP_40...	65.0	[0..10]	[126..27]

Back

Predicted Domain #1

Region A:
Residues: [1-137]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSKVAQQLKF LNKISATTRL PQILVDPKKY SGLRLTFQTK NHNGHMGARV FWHNYLPTLQ  60
   61 FYNPRMKFDV IRIKNEDKQK SVPCKLEILS HEGSVVETID MRNKMHEDIM KDLLDKIEHV 120
  121 PLPENEIIRV GPQESII

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	2.22
Match:	1s3aA
Description:	NMR Solution Structure of Subunit B8 from Human NADH-Ubiquinone Oxidoreductase Complex I (CI-B8)
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits