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View Structure Prediction Details

Protein: RPS27A
Organism: Saccharomyces cerevisiae
Length: 82 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RPS27A.

Description E-value Query
Range
Subject
Range
gi|50752813 - gi|50752813|ref|XP_413758.1| PREDICTED: similar to 40S ribosomal protein S27 [Gallus gallus]
160.0 [0..1] [82..89]
gi|37748758, gi|... - gi|41152144|ref|NP_957059.1| ribosomal protein S27 [Danio rerio], gi|37748758|gb|AAH59595.1| Zgc:732...
152.0 [0..1] [82..1]
gi|61654754 - gi|61654754|gb|AAX48903.1| S27 [Suberites domuncula]
152.0 [0..1] [82..1]
gi|60417166 - gi|60417166|emb|CAH57694.1| 40S ribosomal protein S27 [Platichthys flesus]
gi|47219459 - gi|47219459|emb|CAG10823.1| unnamed protein product [Tetraodon nigroviridis]
gi|124300839 - gi|124300839|dbj|BAF45915.1| ribosomal protein S27-1 [Solea senegalensis]
gi|229366996 - gi|229366996|gb|ACQ58478.1| 40S ribosomal protein S27 [Anoplopoma fimbria]
152.0 [0..1] [82..1]
gi|15294067 - gi|15294067|gb|AAK95210.1|AF402836_1 40S ribosomal protein S27-1 [Ictalurus punctatus]
152.0 [0..1] [82..1]
gi|20530722 - gi|20530722|gb|AAM27204.1|AF502249_1 40s ribosomal protein S27 [Epinephelus coioides]
151.0 [0..1] [82..1]
gi|115975466, gi... - gi|72016327|ref|XP_784036.1| PREDICTED: similar to 40S ribosomal protein S27-1 [Strongylocentrotus p...
150.0 [0..1] [82..1]
gi|40643018 - gi|40643018|emb|CAD91436.1| ribosomal protein S27-1 [Crassostrea gigas]
148.0 [0..1] [82..3]
gi|114593347 - gi|114593347|ref|XP_001164335.1| PREDICTED: similar to metallopanstimulin [Pan troglodytes]
148.0 [0..1] [82..1]

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Predicted Domain #1
Region A:
Residues: [1-82]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVLVQDLLHP TAASEARKHK LKTLVQGPRS YFLDVKCPGC LNITTVFSHA QTAVTCESCS  60
   61 TILCTPTGGK AKLSEGTSFR RK

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 36.677781
Match: PF01667.8
Description: No description for PF01667.8 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

    MCM
Score
GO
Score
GO
Term
SCOP
Match
SCOP Description
View Download 0.888 N/A N/A d.129.1 TATA-box binding protein-like


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle