YRC Public Data Repository - Protein Structure Prediction

Protein:	CMC1
Organism:	Saccharomyces cerevisiae
Length:	103 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CMC1.

Description	E-value	Query Range	Subject Range
CMC1 - Evolutionarily conserved copper-binding protein of the mitochondrial intermembrane space, may be inv... COXM1_YEAST - COX assembly mitochondrial protein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=CMC1 ... COXM1_YEAS7 - COX assembly mitochondrial protein OS=Saccharomyces cerevisiae (strain YJM789) GN=CMC1 PE=3 SV=2	155.0	[0..1]	[103..9]
gi\|42733871 - gi\|42733871\|gb\|AAS38788.1\| hypothetical protein [Dictyostelium discoideum]	136.0	[0..13]	[103..25]
Y5933_DICDI - Uncharacterized protein DDB_G0275933 OS=Dictyostelium discoideum GN=DDB_G0275933 PE=3 SV=1 gi\|60471761, gi\|... - gi\|66819950\|ref\|XP_643632.1\| hypothetical protein [Dictyostelium discoideum AX4], gi\|60471761\|gb\|EAL...	133.0	[0..13]	[103..25]
gi\|26453126, gi\|... - gi\|9755652\|emb\|CAC01805.1\| hypothetical protein [Arabidopsis thaliana], gi\|28416801\|gb\|AAO42931.1\| A...	110.0	[0..17]	[88..16]
gi\|90657614 - gi\|90657614\|gb\|ABD96913.1\| hypothetical protein [Cleome spinosa]	100.0	[0..17]	[90..15]
gi\|49524808 - gi\|49524808\|emb\|CAG58414.1\| unnamed protein product [Candida glabrata] gi\|50286149, gi\|... - gi\|50286149\|ref\|XP_445503.1\| unnamed protein product [Candida glabrata], gi\|49524808\|emb\|CAG58414.1\|...	98.0	[0..3]	[101..7]
gi\|45198719, gi\|... - gi\|45198719\|ref\|NP_985748.1\| AFR201Cp [Ashbya gossypii ATCC 10895], gi\|44984729\|gb\|AAS53572.1\| AFR20... gi\|44984729 - gi\|44984729\|gb\|AAS53572.1\| AFR201Cp [Ashbya gossypii ATCC 10895]	90.0	[0..4]	[97..10]
gi\|49643635, gi\|... - gi\|50308989\|ref\|XP_454500.1\| unnamed protein product [Kluyveromyces lactis], gi\|49643635\|emb\|CAG9958... gi\|49643635 - gi\|49643635\|emb\|CAG99587.1\| KLLA0E12233p [Kluyveromyces lactis]	89.0	[0..2]	[101..5]
gi\|125543171 - gi\|125543171\|gb\|EAY89310.1\| hypothetical protein OsI_10813 [Oryza sativa Indica Group] gi\|108707263, gi... - gi\|215737178\|dbj\|BAG96107.1\| unnamed protein product [Oryza sativa Japonica Group], gi\|215712326\|dbj...	86.0	[0..17]	[88..15]

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Predicted Domain #1

Region A:
Residues: [1-103]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MISKHSSRLP IWVLSPREEQ QARKNLKTET YKKCANFVQA MADCAKANGM KVFPTCDKQR  60
   61 DEMKSCLLFY QTDEKYLDGE RDKIVLEKIN KLEKLCQKQS STK

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

		MCM Score	SCOP Match	SCOP Description
View	Download	0.966	a.8.3	Families 57/38 glycoside transferase middle domain
View	Download	0.949	a.24.9	alpha-catenin/vinculin
View	Download	0.948	a.24.4	Hemerythrin
View	Download	0.938	a.24.14	FAT domain of focal adhesion kinase
View	Download	0.938	a.24.14	FAT domain of focal adhesion kinase
View	Download	0.937	a.8.4	Description not found.
View	Download	0.850	a.8.2	Plasmid maintenance system epsilon/zeta, antidote epsilon subunit
View	Download	0.845	a.8.2	Plasmid maintenance system epsilon/zeta, antidote epsilon subunit
View	Download	0.832	a.24.9	alpha-catenin/vinculin

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits