YRC Public Data Repository - Protein Structure Prediction

Protein:	SHE2
Organism:	Saccharomyces cerevisiae
Length:	246 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SHE2.

Description	E-value	Query Range	Subject Range
SHE2_YEAST - SWI5-dependent HO expression protein 2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=S... SHE2_YEAS8 - SWI5-dependent HO expression protein 2 OS=Saccharomyces cerevisiae (strain Lalvin EC1118 / Prise de ... SHE2 - RNA-binding protein that binds specific mRNAs and interacts with She3p; part of the mRNA localizatio... SHE2_YEAS6 - SWI5-dependent HO expression protein 2 OS=Saccharomyces cerevisiae (strain AWRI1631) GN=SHE2 PE=3 SV... SHE2_YEAS2 - She2p OS=Saccharomyces cerevisiae (strain JAY291) GN=SHE2 PE=3 SV=1 SHE2_YEAS1 - SWI5-dependent HO expression protein 2 OS=Saccharomyces cerevisiae (strain RM11-1a) GN=SHE2 PE=3 SV=...	0.0	[1..246]	[1..246]
gi\|13786578, gi\|... - gi\|13786578\|ref\|NP_112710.1\| ORF47 [Lactococcus phage TP901-1], gi\|13661721\|gb\|AAK38064.1\| ORF47 [La...	0.005	[103..203]	[22..108]

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Predicted Domain #1

Region A:
Residues: [1-246]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSKDKDIKVT PGTCELVEQI LALLSRYLSS YIHVLNKFIS HLRRVATLRF ERTTLIKFVK  60
   61 KLRFYNDCVL SYNASEFINE GKNELDPEAD SFDKVILPIA SMFVKCVETF DLLNYYLTQS 120
  121 LQKEILSKTL NEDLTLTAES ILAIDDTYNH FVKFSQWMIE SLRIGSNLLD LEVVQFAIKC 180
  181 ADEDGTNIGE TDNIFLQEIL PVNSEEEFQT LSAAWHSILD GKLSALDEEF DVVATKWHDK 240
  241 FGKLKN

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted functions:

Term	Confidence	Notes
nucleic acid binding	1.73910022744232	bayes_pls_golite062009
binding	1.6234987165625	bayes_pls_golite062009
mRNA binding	1.61096453035721	bayes_pls_golite062009
RNA binding	0.285539570762759	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: