YRC Public Data Repository - Protein Structure Prediction

Protein:	OAC1
Organism:	Saccharomyces cerevisiae
Length:	324 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for OAC1.

Description	E-value	Query Range	Subject Range
ADT3_BOVIN - ADP/ATP translocase 3 OS=Bos taurus GN=SLC25A6 PE=1 SV=3	9.0E-89	[17..313]	[3..298]
UCP3_PIG - Mitochondrial uncoupling protein 3 OS=Sus scrofa GN=UCP3 PE=2 SV=1	9.0E-89	[13..316]	[4..300]
UCP3_RAT - Mitochondrial uncoupling protein 3 OS=Rattus norvegicus GN=Ucp3 PE=2 SV=1	1.0E-88	[13..316]	[4..300]
UCP3_MOUSE - Mitochondrial uncoupling protein 3 OS=Mus musculus GN=Ucp3 PE=1 SV=1	1.0E-88	[13..316]	[4..300]
gi\|90085585 - gi\|90085585\|dbj\|BAE91533.1\| unnamed protein product [Macaca fascicularis] SLC25A6 - solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6	3.0E-88	[17..313]	[3..298]

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Predicted Domain #1

Region A:
Residues: [1-324]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSDNSKQDK QIEKTAAQKI SKFGSFVAGG LAACIAVTVT NPIELIKIRM QLQGEMSASA  60
   61 AKVYKNPIQG MAVIFKNEGI KGLQKGLNAA YIYQIGLNGS RLGFYEPIRS SLNQLFFPDQ 120
  121 EPHKVQSVGV NVFSGAASGI IGAVIGSPLF LVKTRLQSYS EFIKIGEQTH YTGVWNGLVT 180
  181 IFKTEGVKGL FRGIDAAILR TGAGSSVQLP IYNTAKNILV KNDLMKDGPA LHLTASTISG 240
  241 LGVAVVMNPW DVILTRIYNQ KGDLYKGPID CLVKTVRIEG VTALYKGFAA QVFRIAPHTI 300
  301 MCLTFMEQTM KLVYSIESRV LGHN

[Run NCBI BLAST on this sequence.]

Detection Method:	ORFEUS
Confidence:	7.71
Match:	1is2A
Description:	Peroxisomal acyl-CoA oxidase-II, domains 3 and 4; Peroxisomal acyl-CoA oxidase-II, domains 1 and 2
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits