YRC Public Data Repository - Protein Structure Prediction

Protein:	YKL107W
Organism:	Saccharomyces cerevisiae
Length:	309 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YKL107W.

Description	E-value	Query Range	Subject Range
gi\|115434568, gi... - gi\|9663977\|dbj\|BAB03618.1\| putative pod-specific dehydrogenase SAC25 [Oryza sativa Japonica Group], ...	3.0E-79	[10..294]	[20..316]
gi\|7507776 - gi\|7507776\|pir\|\|T16867 probable cytochrome P450 T13C5.1 [similarity] - Caenorhabditis elegans	2.0E-76	[8..294]	[18..316]
gi\|15292559 - gi\|15292559\|gb\|AAK93548.1\| SD07613p [Drosophila melanogaster]	3.0E-75	[16..296]	[36..323]
gi\|7485438, gi\|2... - pir\|\|T02520 probable oxidoreductase [imported] - Arabidopsis thaliana, gi\|3236237\|gb\|AAC23625.1\| pu...	1.0E-74	[8..294]	[18..316]
FABG_THEMA - 3-oxoacyl-[acyl-carrier-protein] reductase FabG OS=Thermotoga maritima GN=fabG PE=3 SV=1 FABG_THEMA - 3-oxoacyl-[acyl-carrier-protein] reductase FabG OS=Thermotoga maritima (strain ATCC 43589 / MSB8 / D...	4.0E-74	[19..270]	[1..243]
RDH11_MOUSE - Retinol dehydrogenase 11 OS=Mus musculus GN=Rdh11 PE=1 SV=2	1.0E-73	[16..299]	[31..315]
gi\|25283158 - pir\|\|C83961 3-oxoacyl-(acyl-carrier protein) reductase fabG [imported] - Bacillus halodurans (strain... gi\|10175111, gi\|... - gi\|15615054\|ref\|NP_243357.1\| 3-oxoacyl-(acyl-carrier protein) reductase [Bacillus halodurans C-125],...	7.0E-73	[21..273]	[2..246]

Back

Predicted Domain #1

Region A:
Residues: [1-309]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFWKKDPTVS WERKNINDID FSRFNVAIIG GTGGLGRAIS RELAQRNARV TVVGQTFRDE  60
   61 DLKDKINFVK ADLSLVSECK RISHSDEIPY EELTHLIFTT GIFASRQRQA TSEGLEKDMA 120
  121 VSYLSRYIIF HDVAKRLGIS RTKKDDLPKV FIAGFPGNGQ VGDPDDLNSD EKKYSAYATH 180
  181 MNTVAANESL VIDAKDRYTN IDTFGLNPGL IKTNIRNNLL GSDTYLSRIT EWIISWTCQS 240
  241 AETYAKTICT LIASPAIESR SGTMFSNKGD AILPSPGLTK DVVEKFMENS ELLVEKALRN 300
  301 QSPFTSSNE

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	66.0
Match:	1ae1A_
Description:	Tropinone reductase
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	1.03099072397093	bayes_pls_golite062009
oxidoreductase activity	0.442294542097958	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: