YRC Public Data Repository - Protein Structure Prediction

Protein:	YNK1
Organism:	Saccharomyces cerevisiae
Length:	153 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YNK1.

Description	E-value	Query Range	Subject Range
NDK_CHICK - Nucleoside diphosphate kinase OS=Gallus gallus PE=2 SV=1	2.0E-72	[1..153]	[1..153]
gi\|1421613, gi\|1... - gi\|206581883\|pdb\|3BBF\|F Chain F, Crystal Structure Of The Nm23-H2 Transcription Factor Complex With ...	8.0E-72	[3..153]	[1..151]
NDK_COLLI - Nucleoside diphosphate kinase OS=Columba livia PE=2 SV=2	1.0E-71	[1..153]	[1..153]
NDKB_RAT - Nucleoside diphosphate kinase B OS=Rattus norvegicus GN=Nme2 PE=1 SV=1	2.0E-71	[3..153]	[2..152]
NDKA2_XENLA - Nucleoside diphosphate kinase A2 OS=Xenopus laevis PE=2 SV=1	2.0E-71	[1..153]	[1..153]
NDKB_MOUSE - Nucleoside diphosphate kinase B OS=Mus musculus GN=Nme2 PE=1 SV=1	3.0E-71	[3..153]	[2..152]
gi\|10180968 - gi\|10180968\|gb\|AAG14350.1\|AF283993_1 putative oncoprotein nm23 [Ictalurus punctatus]	8.0E-71	[1..153]	[1..153]

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Predicted Domain #1

Region A:
Residues: [1-153]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSQTERTFI AVKPDGVQRG LVSQILSRFE KKGYKLVAIK LVKADDKLLE QHYAEHVGKP  60
   61 FFPKMVSFMK SGPILATVWE GKDVVRQGRT ILGATNPLGS APGTIRGDFG IDLGRNVCHG 120
  121 SDSVDSAERE INLWFKKEEL VDWESNQAKW IYE

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	596.502279
Match:	1nueA_
Description:	Nucleoside diphosphate kinases
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits