| Protein: | NUP120 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 1037 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for NUP120.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..1037] | [1..1037] |
|
Region A: Residues: [1-479] |
1 11 21 31 41 51
| | | | | |
1 MACLSRIDAN LLQYYEKPEP NNTVDLYVSN NSNNNGLKEG DKSISTPVPQ PYGSEYSNCL 60
61 LLSNSEYICY HFSSRSTLLT FYPLSDAYHG KTINIHLPNA SMNQRYTLTI QEVEQQLLVN 120
121 VILKDGSFLT LQLPLSFLFS SANTLNGEWF HLQNPYDFTV RVPHFLFYVS PQFSVVFLED 180
181 GGLLGLKKVD GVHYEPLLFN DNSYLKSLTR FFSRSSKSDY DSVISCKLFH ERYLIVLTQN 240
241 CHLKIWDLTS FTLIQDYDMV SQSDSDPSHF RKVEAVGEYL SLYNNTLVTL LPLENGLFQM 300
301 GTLLVDSSGI LTYTFQNNIP TNLSASAIWS IVDLVLTRPL ELNVEASYLN LIVLWKSGTA 360
361 SKLQILNVND ESFKNYEWIE SVNKSLVDLQ SEHDLDIVTK TGDVERGFCN LKSRYGTQIF 420
421 ERAQQILSEN KIIMAHNEDE EYLANLETIL RDVKTAFNEA SSITLYGDEI ILVNCFQPY
|
| Detection Method: |  |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
| Term | Confidence | Notes |
| nucleocytoplasmic transporter activity | 6.69510224853745 | bayes_pls_golite062009 |
| transporter activity | 2.44173429092591 | bayes_pls_golite062009 |
| binding | 1.85742618935461 | bayes_pls_golite062009 |
| structural molecule activity | 1.08319592328349 | bayes_pls_golite062009 |
| protein binding | 0.749555781220334 | bayes_pls_golite062009 |
|
Region A: Residues: [480-1037] |
1 11 21 31 41 51
| | | | | |
1 NHSLYKLNTT VENWFYNMHS ETDGSELFKY LRTLNGFAST LSNDVLRSIS KKFLDIITGE 60
61 LPDSMTTVEK FTDIFKNCLE NQFEITNLKI LFDELNSFDI PVVLNDLINN QMKPGIFWKK 120
121 DFISAIKFDG FTSIISLESL HQLLSIHYRI TLQVLLTFVL FDLDTEIFGQ HISTLLDLHY 180
181 KQFLLLNLYR QDKCLLAEVL LKDSSEFSFG VKFFNYGQLI AYIDSLNSNV YNASITENSF 240
241 FMTFFRSYII ENTSHKNIRF FLENVECPFY LRHNEVQEFM FAMTLFSCGN FDQSYEIFQL 300
301 HDYPEAINDK LPTFLEDLKS ENYHGDSIWK DLLCTFTVPY RHSAFYYQLS LLFDRNNSQE 360
361 FALKCISKSA EYSLKEIQIE ELQDFKEKQH IHYLNLLIHF RMFEEVLDVL RLGHECLSDT 420
421 VRTNFLQLLL QEDIYSRDFF STLLRLCNAH SDNGELYLRT VDIKIVDSIL SQNLRSGDWE 480
481 CFKKLYCFRM LNKSERAAAE VLYQYILMQA DLDVIRKRKC YLMVINVLSS FDSAYDQWIL 540
541 NGSKVVTLTD LRDELRGL
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [590-745] |
1 11 21 31 41 51
| | | | | |
1 QMKPGIFWKK DFISAIKFDG FTSIISLESL HQLLSIHYRI TLQVLLTFVL FDLDTEIFGQ 60
61 HISTLLDLHY KQFLLLNLYR QDKCLLAEVL LKDSSEFSFG VKFFNYGQLI AYIDSLNSNV 120
121 YNASITENSF FMTFFRSYII ENTSHKNIRF FLENVE
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [746-1037] |
1 11 21 31 41 51
| | | | | |
1 CPFYLRHNEV QEFMFAMTLF SCGNFDQSYE IFQLHDYPEA INDKLPTFLE DLKSENYHGD 60
61 SIWKDLLCTF TVPYRHSAFY YQLSLLFDRN NSQEFALKCI SKSAEYSLKE IQIEELQDFK 120
121 EKQHIHYLNL LIHFRMFEEV LDVLRLGHEC LSDTVRTNFL QLLLQEDIYS RDFFSTLLRL 180
181 CNAHSDNGEL YLRTVDIKIV DSILSQNLRS GDWECFKKLY CFRMLNKSER AAAEVLYQYI 240
241 LMQADLDVIR KRKCYLMVIN VLSSFDSAYD QWILNGSKVV TLTDLRDELR GL
|
| Detection Method: | |
| Confidence: | 0.975 |
| Match: | 1qqeA |
| Description: | Vesicular transport protein sec17 |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 2.50062202757362 | bayes_pls_golite062009 |
| protein binding | 1.72061787550863 | bayes_pls_golite062009 |
| signal sequence binding | 1.06643404565266 | bayes_pls_golite062009 |
