YRC Public Data Repository - Protein Structure Prediction

Protein:	GPX1
Organism:	Saccharomyces cerevisiae
Length:	167 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for GPX1.

Description	E-value	Query Range	Subject Range
gi\|2982362 - gi\|2982362\|gb\|AAC78466.1\| glutathione peroxidase [Zantedeschia aethiopica]	6.0E-49	[2..161]	[85..244]
gi\|6179600 - gi\|6179600\|emb\|CAB59893.1\| GPX12Hv, glutathione peroxidase-like protein [Hordeum vulgare subsp. vulg...	4.0E-48	[2..160]	[77..235]
GPX6_ARATH - Probable phospholipid hydroperoxide glutathione peroxidase 6, mitochondrial OS=Arabidopsis thaliana ...	8.0E-48	[2..160]	[71..229]
gi\|25285632 - pir\|\|F87463 glutathione peroxidase [imported] - Caulobacter crescentus gi\|13423148, gi\|... - gi\|16125974\|ref\|NP_420538.1\| glutathione peroxidase [Caulobacter crescentus CB15], gi\|13423148\|gb\|AA... gi\|221234741, gi... - gi\|221234741\|ref\|YP_002517177.1\| glutathione peroxidase [Caulobacter crescentus NA1000], gi\|22096391...	7.0E-47	[3..159]	[4..160]
GPX4_SOLLC - Probable phospholipid hydroperoxide glutathione peroxidase OS=Solanum lycopersicum GN=GPXle-1 PE=2 S...	2.0E-46	[2..160]	[9..167]
GPX4_MESCR - Probable phospholipid hydroperoxide glutathione peroxidase OS=Mesembryanthemum crystallinum GN=GPXMC...	3.0E-46	[2..160]	[10..168]
gi\|18026892 - gi\|18026892\|gb\|AAL55674.1\| glutathione peroxidase [Hevea brasiliensis]	1.0E-45	[2..158]	[8..164]
GPX4_TOBAC - Probable phospholipid hydroperoxide glutathione peroxidase OS=Nicotiana tabacum PE=2 SV=1	1.0E-45	[2..160]	[9..167]
gi\|7507776 - gi\|7507776\|pir\|\|T16867 probable cytochrome P450 T13C5.1 [similarity] - Caenorhabditis elegans	1.0E-45	[2..163]	[10..171]

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Predicted Domain #1

Region A:
Residues: [1-167]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQEFYSFSPI DENGNPFPFN SLRNKVVLIV NVASHCAFTP QYKELEYLYE KYKSHGLVIV  60
   61 AFPCGQFGNQ EFEKDKEINK FCQDKYGVTF PILHKIRCNG QKQDPVYKFL KNSVSGKSGI 120
  121 KMIKWNFEKF VVDRNGKVVK RFSCMTRPLE LCPIIEELLN QPPEEQI

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	205.39794
Match:	1gp1A_
Description:	Glutathione peroxidase
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits