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View Structure Prediction Details

Protein: YKL018C-A
Organism: Saccharomyces cerevisiae
Length: 99 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YKL018C-A.

Description E-value Query
Range
Subject
Range
gi|50293571, gi|... - gi|50293571|ref|XP_449197.1| unnamed protein product [Candida glabrata], gi|49528510|emb|CAG62167.1|...
gi|49528510 - gi|49528510|emb|CAG62167.1| unnamed protein product [Candida glabrata]
77.0 [0..4] [78..6]
gi|45185588, gi|... - gi|45185588|ref|NP_983304.1| ACL100Cp [Ashbya gossypii ATCC 10895], gi|44981306|gb|AAS51128.1| ACL10...
gi|44981306 - gi|44981306|gb|AAS51128.1| ACL100Cp [Ashbya gossypii ATCC 10895]
58.0 [0..4] [73..1]
gi|49643899 - gi|49643899|emb|CAG99851.1| KLLA0E18041p [Kluyveromyces lactis]
gi|49643899, gi|... - gi|50309509|ref|XP_454764.1| unnamed protein product [Kluyveromyces lactis], gi|49643899|emb|CAG9985...
52.0 [0..4] [73..6]

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Predicted Domain #1
Region A:
Residues: [1-99]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLGMIRWVVE GTLVAMLLSA IRRETGMIFF YNQYQLGGWI HRYLSWGEMC YTRTLKMVKR  60
   61 SKFFRKQLNE DGFGRINDSG PKRRGRDQSQ YSSRFVELD

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 6.29243
Match: PF08520.1
Description: No description for PF08520.1 was found.

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

    MCM
Score
GO
Score
GO
Term
SCOP
Match
SCOP Description
View Download 0.515 N/A N/A c.51.1 Anticodon-binding domain of Class II aaRS
View Download 0.515 N/A N/A c.51.1 Anticodon-binding domain of Class II aaRS
View Download 0.474 N/A N/A c.51.1 Anticodon-binding domain of Class II aaRS
View Download 0.474 N/A N/A c.51.1 Anticodon-binding domain of Class II aaRS
View Download 0.473 N/A N/A c.58.1 Aminoacid dehydrogenase-like, N-terminal domain
View Download 0.473 N/A N/A c.58.1 Aminoacid dehydrogenase-like, N-terminal domain
View Download 0.399 N/A N/A c.51.1 Anticodon-binding domain of Class II aaRS
View Download 0.399 N/A N/A c.51.1 Anticodon-binding domain of Class II aaRS
View Download 0.359 N/A N/A a.36.1 Signal peptide-binding domain
View Download 0.359 N/A N/A a.36.1 Signal peptide-binding domain
View Download 0.310 N/A N/A a.109.1 Class II MHC-associated invariant chain ectoplasmic trimerization domain
View Download 0.240 N/A N/A a.109.1 Class II MHC-associated invariant chain ectoplasmic trimerization domain
View Download 0.233 N/A N/A d.58.4 Dimeric alpha+beta barrel
View Download 0.201 N/A N/A c.51.1 Anticodon-binding domain of Class II aaRS


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle