YRC Public Data Repository - Protein Structure Prediction

Protein:	YJR154W
Organism:	Saccharomyces cerevisiae
Length:	346 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YJR154W.

Description	E-value	Query Range	Subject Range
gi\|151945221 - gi\|151945221\|gb\|EDN63472.1\| conserved protein [Saccharomyces cerevisiae YJM789] YJR154W - Putative protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to th... YJ9S_YEAST - Uncharacterized protein YJR154W OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YJR154W ...	0.0	[1..346]	[1..346]
gi\|126194038, gi... - gi\|254240660\|ref\|ZP_04933982.1\| hypothetical protein PA2G_01319 [Pseudomonas aeruginosa 2192], gi\|19... gi\|12698398 - gi\|12698398\|gb\|AAK01512.1\| hypothetical protein [Pseudomonas aeruginosa]	1.0E-73	[36..333]	[3..295]
PAHX_RAT - Phytanoyl-CoA dioxygenase, peroxisomal OS=Rattus norvegicus GN=Phyh PE=1 SV=2	7.0E-63	[50..311]	[56..330]
gi\|11035010 - gi\|11035010\|gb\|AAG27131.1\|AF155773_4 Fum3p [Gibberella moniliformis]	8.0E-63	[33..306]	[12..278]
gi\|7507776 - gi\|7507776\|pir\|\|T16867 probable cytochrome P450 T13C5.1 [similarity] - Caenorhabditis elegans	3.0E-58	[50..311]	[56..330]
PAHX_MOUSE - Phytanoyl-CoA dioxygenase, peroxisomal OS=Mus musculus GN=Phyh PE=1 SV=1	3.0E-58	[50..311]	[56..330]
PAHX_BOVIN - (O18778) Phytanoyl-CoA dioxygenase, peroxisomal precursor (EC 1.14.11.18) (Phytanoyl-CoA alpha-hydro...	3.0E-55	[50..311]	[56..329]
PHYH - phytanoyl-CoA 2-hydroxylase gi\|123995019, gi... - gi\|123995019\|gb\|ABM85111.1\| phytanoyl-CoA 2-hydroxylase [synthetic construct], gi\|123980208\|gb\|ABM81...	3.0E-55	[50..311]	[56..330]

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Predicted Domain #1

Region A:
Residues: [1-346]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNTDSHNLSE PYNIGGQKYI NMKKKEDLGV CQPGLTQKAF TVEDKFDYKA IIEKMEVYGL  60
   61 CVVKNFIETS RCDEILKEIE PHFYRYESWQ GSPFPKETTV ATRSVLHSST VLKDVVCDRM 120
  121 FCDISKHFLN EENYFAAGKV INKCTSDIQL NSGIVYKVGA GASDQGYHRE DIVHHTTHQA 180
  181 CERFQYGTET MVGLGVAFTD MNKENGSTRM IVGSHLWGPH DSCGNFDKRM EFHVNVAKGD 240
  241 AVLFLGSLYH AASANRTSQD RVAGYFFMTK SYLKPEENLH LGTDLRVFKG LPLEALQLLG 300
  301 LGISEPFCGH IDYKSPGHLI SSSLFENDIE KGYYGETIRV NYGSTQ

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted functions:

Term	Confidence	Notes
catalytic activity	0.154892236593256	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: