YRC Public Data Repository - Protein Structure Prediction

Protein:	ILM1
Organism:	Saccharomyces cerevisiae
Length:	203 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ILM1.

Description	E-value	Query Range	Subject Range
ILM1_SCHPO - Protein ilm1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=ilm1 PE=3 SV=1 SPAC1782.02c - conserved fungal protein	200.0	[0..16]	[144..4]
gi\|49526131, gi\|... - gi\|50288785\|ref\|XP_446822.1\| unnamed protein product [Candida glabrata], gi\|49526131\|emb\|CAG59753.1\|... gi\|49526131 - gi\|49526131\|emb\|CAG59753.1\| unnamed protein product [Candida glabrata]	173.0	[0..5]	[162..4]
gi\|49642676, gi\|... - gi\|50307127\|ref\|XP_453542.1\| unnamed protein product [Kluyveromyces lactis], gi\|49642676\|emb\|CAH0063... gi\|49642676 - gi\|49642676\|emb\|CAH00638.1\| KLLA0D10780p [Kluyveromyces lactis]	134.0	[0..5]	[180..4]
gi\|44981086 - gi\|44981086\|gb\|AAS50938.1\| ABR166Cp [Ashbya gossypii ATCC 10895] gi\|45185397, gi\|... - gi\|45185397\|ref\|NP_983114.1\| ABR166Cp [Ashbya gossypii ATCC 10895], gi\|44981086\|gb\|AAS50938.1\| ABR16...	130.0	[0..10]	[140..9]
gi\|50413441, gi\|... - gi\|50413441\|ref\|XP_457263.1\| hypothetical protein DEHA0B06996g [Debaryomyces hansenii CBS767], gi\|49...	108.0	[0..3]	[146..2]
orf19.10575, orf... - orf19.3057 CGDID:CAL0001437 Assembly 19, Contig19-10163 (247290, 246787) CDS, reverse complemented, ... gi\|46443193, gi\|... - gi\|68469542\|ref\|XP_721284.1\| hypothetical protein CaO19.10575 [Candida albicans SC5314], gi\|68468993...	100.0	[0..3]	[146..2]
gi\|50553991, gi\|... - gi\|50553991\|ref\|XP_504404.1\| YALI0E25916p [Yarrowia lipolytica], gi\|49650273\|emb\|CAG80004.1\| unnamed... gi\|49650273 - gi\|49650273\|emb\|CAG80004.1\| YALI0E25916p [Yarrowia lipolytica]	92.0	[0..14]	[145..12]
gi\|111067703, gi... - gi\|169601502\|ref\|XP_001794173.1\| hypothetical protein SNOG_03618 [Phaeosphaeria nodorum SN15], gi\|11...	77.0	[0..17]	[146..16]
gi\|46122775, gi\|... - gi\|46122775\|ref\|XP_385941.1\| hypothetical protein FG05765.1 [Gibberella zeae PH-1], gi\|42552997\|gb\|E...	50.0	[0..17]	[139..16]

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Predicted Domain #1

Region A:
Residues: [1-203]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAQALNSTNI AFFRVAFLFT IAFFCLKNVN SILQNTYFIV LTQAMNLPQL TLSRYSGQLG  60
   61 LFALLFTLNG VHDLIPLLEN NVKYFQSVVP VRLLIFFILT SISYLWESNF YVHNNSVFIY 120
  121 CFAEVWINFL LYNAIREEKN EEFKRLNQFM VNDEDIEEPQ PFTVKTETTE IIEIINDEEN 180
  181 DDEDGKDNDD NNEKGNDDSD AKK

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.525	N/A	N/A	a.24.9	alpha-catenin/vinculin
View	Download	0.508	N/A	N/A	a.192.1	Description not found.
View	Download	0.422	N/A	N/A	f.13.1	Family A G protein-coupled receptor-like
View	Download	0.422	N/A	N/A	f.13.1	Family A G protein-coupled receptor-like
View	Download	0.396	N/A	N/A	a.4.9	Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3
View	Download	0.396	N/A	N/A	a.4.9	Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3
View	Download	0.312	N/A	N/A	c.73.1	Carbamate kinase-like
View	Download	0.290	N/A	N/A	a.146.1	Telomeric repeat binding factor (TRF) dimerisation domain
View	Download	0.224	N/A	N/A	d.79.4	Aminoimidazole ribonucleotide synthetase (PurM) N-terminal domain

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits