YRC Public Data Repository - Protein Structure Prediction

Protein:	NNF1
Organism:	Saccharomyces cerevisiae
Length:	201 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for NNF1.

Description	E-value	Query Range	Subject Range
gi\|1072421 - gi\|1072421\|emb\|CAA63725.1\| NNF1 [Saccharomyces cerevisiae]	333.0	[0..1]	[201..1]
NNF1_SCHPO - Kinetochore protein nnf1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=nnf1 PE=1 SV=1 nnf1 - kinetochore protein Nnf1	178.0	[0..8]	[152..4]
gi\|50285911, gi\|... - gi\|50285911\|ref\|XP_445384.1\| unnamed protein product [Candida glabrata], gi\|49524688\|emb\|CAG58290.1\|... gi\|49524688 - gi\|49524688\|emb\|CAG58290.1\| unnamed protein product [Candida glabrata]	144.0	[0..1]	[200..1]
gi\|44981070 - gi\|44981070\|gb\|AAS50922.1\| ABR150Cp [Ashbya gossypii ATCC 10895] gi\|45185381, gi\|... - gi\|45185381\|ref\|NP_983098.1\| ABR150Cp [Ashbya gossypii ATCC 10895], gi\|44981070\|gb\|AAS50922.1\| ABR15...	142.0	[0..1]	[199..1]
gi\|49643343 - gi\|49643343\|emb\|CAG99295.1\| KLLA0E05809p [Kluyveromyces lactis] gi\|50308413, gi\|... - gi\|50308413\|ref\|XP_454208.1\| unnamed protein product [Kluyveromyces lactis], gi\|49643343\|emb\|CAG9929...	117.0	[0..1]	[199..9]
gi\|50418799, gi\|... - gi\|50418799\|ref\|XP_457920.1\| hypothetical protein DEHA0C06039g [Debaryomyces hansenii CBS767], gi\|49...	84.0	[0..7]	[171..8]
gi\|66845558, gi\|... - gi\|70984848\|ref\|XP_747930.1\| spindle pole protein (Nnf1), putative [Aspergillus fumigatus Af293], gi...	83.0	[0..6]	[160..362]
gi\|90304064, gi\|... - gi\|90304064\|gb\|EAS33695.1\| hypothetical protein CIMG_04719 [Coccidioides immitis RS], gi\|119189343\|r...	80.0	[0..6]	[191..35]
gi\|68475138, gi\|... - gi\|68475329\|ref\|XP_718187.1\| potential spindle pole protein [Candida albicans SC5314], gi\|68475138\|r... orf19.2519, orf1... - orf19.2519 CGDID:CAL0002398 Assembly 19, Contig19-10151 (3949, 4539) CDS, translated using codon tab...	72.0	[0..7]	[158..9]
gi\|50549463, gi\|... - gi\|50549463\|ref\|XP_502202.1\| hypothetical protein [Yarrowia lipolytica], gi\|49648069\|emb\|CAG82524.1\|...	70.0	[0..8]	[169..27]

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Predicted Domain #1

Region A:
Residues: [1-201]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVNSHGIRYI RLKQVFNRAL DQSISKLQSW DKVSSCFPQY VNSKQGAINV ANCQRQLTEF  60
   61 WTELCQREFK EIMEERNVEQ KLNELDELIL EAKERYTDRD QDEVNKGPAI DELSSKELVE 120
  121 CHLYSQRMHA IHEIDERLAK VNEMNDQLAQ ELKDLETQVE VEKNEIGKMY DEYLGSHTDQ 180
  181 PANVLLVQSL NDMVLELKEN Y

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.89
Match:	1jchA
Description:	Ribonuclease domain of colicin E3; Colicin E3 translocation domain; Colicin E3 receptor domain
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits