YRC Public Data Repository - Protein Structure Prediction

Protein:	SFC1
Organism:	Saccharomyces cerevisiae
Length:	322 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SFC1.

Description	E-value	Query Range	Subject Range
ADT3_BOVIN - ADP/ATP translocase 3 OS=Bos taurus GN=SLC25A6 PE=1 SV=3	1.0E-89	[1..304]	[1..298]
gi\|90085585 - gi\|90085585\|dbj\|BAE91533.1\| unnamed protein product [Macaca fascicularis] SLC25A6 - solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6	3.0E-89	[1..304]	[1..298]
gi\|148224610, gi... - gi\|7542476\|gb\|AAF63471.1\|AF231347_1 adenine nucleotide translocase [Xenopus laevis], gi\|27882617\|gb\|...	3.0E-88	[5..304]	[3..298]
gi\|4115756, gi\|4... - gi\|4115761\|dbj\|BAA36510.1\| ADP/ATP translocase [Rana rugosa], gi\|4115756\|dbj\|BAA36509.1\| ADP/ATP tra...	4.0E-88	[5..304]	[3..298]
ADT2_MOUSE - ADP/ATP translocase 2 OS=Mus musculus GN=Slc25a5 PE=1 SV=3	7.0E-88	[9..303]	[7..297]

Back

Predicted Domain #1

Region A:
Residues: [1-107]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSQKKKASHP AINLMAGGTA GLFEALCCHP LDTIKVRMQI YRRVAGIEHV KPPGFIKTGR  60
   61 TIYQKEGFLA LYKGLGAVVI GIIPKMAIRF SSYEFYRTLL VNKESGI

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	31.251812
Match:	PF00153
Description:	Mitochondrial carrier protein

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [108-211]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VSTGNTFVAG VGAGITEAVL VVNPMEVVKI RLQAQHLTPS EPNAGPKYNN AIHAAYTIVK  60
   61 EEGVSALYRG VSLTAARQAT NQGANFTVYS KLKEFLQNYH QMDV

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	28.39794
Match:	PF00153
Description:	Mitochondrial carrier protein

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [212-322]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LPSWETSCIG LISGAIGPFS NAPLDTIKTR LQKDKSISLE KQSGMKKIIT IGAQLLKEEG  60
   61 FRALYKGITP RVMRVAPGQA VTFTVYEYVR EHLENLGIFK KNDTPKPKPL K

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	27.657577
Match:	PF00153
Description:	Mitochondrial carrier protein

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits