YRC Public Data Repository - Protein Structure Prediction

Protein:	YJR085C
Organism:	Saccharomyces cerevisiae
Length:	105 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YJR085C.

Description	E-value	Query Range	Subject Range
gi\|50744874 - gi\|50744874\|ref\|XP_419915.1\| PREDICTED: similar to RIKEN cDNA 5730496E24 [Gallus gallus]	120.0	[0..1]	[91..200]
FAX2_ARATH - Protein FATTY ACID EXPORT 2, chloroplastic OS=Arabidopsis thaliana GN=FAX2 PE=2 SV=1	108.0	[0..6]	[97..142]
gi\|57110218 - gi\|57110218\|ref\|XP_535885.1\| PREDICTED: similar to transmembrane protein 14C [Canis familiaris]	107.0	[0..1]	[93..11]
TM14C_RAT - Transmembrane protein 14C OS=Rattus norvegicus GN=Tmem14c PE=3 SV=1	105.0	[0..1]	[93..11]
gi\|109069605, gi... - gi\|109069605\|ref\|XP_001087822.1\| PREDICTED: transmembrane protein 14C isoform 2 [Macaca mulatta], gi...	104.0	[0..1]	[93..10]
gi\|114605447, gi... - gi\|114605451\|ref\|XP_001167368.1\| PREDICTED: transmembrane protein 14C isoform 4 [Pan troglodytes], g... TMEM14C - transmembrane protein 14C gi\|123983879, gi... - gi\|123998203\|gb\|ABM86703.1\| transmembrane protein 14C [synthetic construct], gi\|123983879\|gb\|ABM8348...	104.0	[0..1]	[93..10]
TM14C_PONAB - Transmembrane protein 14C OS=Pongo abelii GN=TMEM14C PE=3 SV=1 gi\|55731390 - gi\|55731390\|emb\|CAH92409.1\| hypothetical protein [Pongo abelii]	103.0	[0..1]	[93..10]

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Predicted Domain #1

Region A:
Residues: [1-105]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEHPAYTLSL LTTAGGLMGY YRKGSIPSLV SGLVFGSVYG IAGYLLHMNR DGGLEMALGA  60
   61 STLLLGAGVI RGMPSRFTKP VPVVLTALGG LGSYYYYNKY KEFYP

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	44.468521
Match:	PF03647.4
Description:	No description for PF03647.4 was found.

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.970	N/A	N/A	a.29.16	Description not found.
View	Download	0.959	N/A	N/A	a.29.6	Description not found.
View	Download	0.950	N/A	N/A	a.29.10	Description not found.
View	Download	0.944	N/A	N/A	a.130.1	Chorismate mutase II
View	Download	0.932	N/A	N/A	a.4.9	Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3
View	Download	0.932	N/A	N/A	a.4.9	Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3
View	Download	0.915	N/A	N/A	a.71.2	Helical domain of Sec23/24
View	Download	0.895	N/A	N/A	a.7.6	Ribosomal protein S20
View	Download	0.837	N/A	N/A	a.27.1	Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases
View	Download	0.830	N/A	N/A	a.118.8	TPR-like

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits