YRC Public Data Repository - Protein Structure Prediction

Protein:	YAE1
Organism:	Saccharomyces cerevisiae
Length:	141 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YAE1.

Description	E-value	Query Range	Subject Range
YAE1_CANGA - Uncharacterized protein YAE1 OS=Candida glabrata GN=YAE1 PE=3 SV=1 YAE1_CANGA - Uncharacterized protein YAE1 OS=Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 ...	128.0	[0..1]	[139..1]
CG31142-PA - This gene is referred to in FlyBase by the symbol Dmel\CG31142 (CG31142, FBgn0047114). It is a prote... gi\|220948446, gi... - gi\|220957762\|gb\|ACL91424.1\| CG31142-PA [synthetic construct], gi\|220948446\|gb\|ACL86766.1\| CG31142-PA...	124.0	[0..11]	[108..5]
YAE1_CANAL - Uncharacterized protein YAE1 OS=Candida albicans GN=YAE1 PE=3 SV=1 YAE1_CANAL - Uncharacterized protein YAE1 OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=YAE1 PE=3 SV=1	124.0	[0..17]	[126..52]
gi\|8778246 - gi\|8778246\|gb\|AAF79255.1\|AC023279_4 F12K21.9 [Arabidopsis thaliana]	117.0	[0..4]	[78..555]
gi\|157816887, gi... - gi\|62663635\|ref\|XP_225401.3\| PREDICTED: hypothetical protein [Rattus norvegicus], gi\|157816887\|ref\|N...	109.0	[0..2]	[75..12]
gi\|12837962, gi\|... - gi\|74207328\|dbj\|BAE30848.1\| unnamed protein product [Mus musculus], gi\|29145090\|gb\|AAH48453.1\| RIKEN...	108.0	[0..2]	[75..12]

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Predicted Domain #1

Region A:
Residues: [1-141]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSNTWDDVWA SDSDVETERS PDLVKLRENH SKRGYLDGIV SSKEEKLQEG FNDGFPTGAK  60
   61 LGKQVGIIMG ILLGLRTRFG DEDEDLSKAY IDAQKELRIN KVLSKSIFDP NFDLQEKHPL 120
  121 ITKWTDIANT YCEKYHVPSI Q

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

		MCM Score	SCOP Match	SCOP Description
View	Download	0.900	a.24.9	alpha-catenin/vinculin

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits