YRC Public Data Repository - Protein Structure Prediction

Protein:	ARP3
Organism:	Saccharomyces cerevisiae
Length:	449 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ARP3.

Description	E-value	Query Range	Subject Range
gi\|194130965, gi... - gi\|195340496\|ref\|XP_002036849.1\| GM12447 [Drosophila sechellia], gi\|194130965\|gb\|EDW53008.1\| GM12447... gi\|195401955, gi... - gi\|195401955\|ref\|XP_002059576.1\| GJ14747 [Drosophila virilis], gi\|194147283\|gb\|EDW62998.1\| GJ14747 [... gi\|195432731, gi... - gi\|195432731\|ref\|XP_002064370.1\| GK20124 [Drosophila willistoni], gi\|194160455\|gb\|EDW75356.1\| GK2012... gi\|195480603, gi... - gi\|195480603\|ref\|XP_002101323.1\| Act57B [Drosophila yakuba], gi\|194188847\|gb\|EDX02431.1\| Act57B [Dro... gi\|89473786, gi\|... - gi\|89473786\|gb\|ABD72705.1\| putative actin [Acyrthosiphon pisum], gi\|187109134\|ref\|NP_001119672.1\| ac... gi\|195565315, gi... - gi\|195565315\|ref\|XP_002106247.1\| GD16764 [Drosophila simulans], gi\|194203621\|gb\|EDX17197.1\| GD16764 ... ACT4_BOMMO - Actin, cytoplasmic A4 OS=Bombyx mori GN=A4 PE=2 SV=1 gi\|91088365, gi\|... - gi\|91088369\|ref\|XP_976070.1\| PREDICTED: similar to Actin-5C isoform 3 [Tribolium castaneum], gi\|9108... gi\|220947776, gi... - gi\|220957086\|gb\|ACL91086.1\| Act5C-PA [synthetic construct], gi\|220947776\|gb\|ACL86431.1\| Act5C-PA [sy... gi\|170048737, gi... - gi\|170048737\|ref\|XP_001870756.1\| conserved hypothetical protein [Culex quinquefasciatus], gi\|1678707... gi\|190648678, gi... - gi\|194889160\|ref\|XP_001977029.1\| GG18797 [Drosophila erecta], gi\|190648678\|gb\|EDV45956.1\| GG18797 [D... gi\|193892986, gi... - gi\|195046398\|ref\|XP_001992145.1\| GH24372 [Drosophila grimshawi], gi\|193892986\|gb\|EDV91852.1\| GH24372... gi\|125981707\|ref... - GA17886-PA [Drosophila pseudoobscura], GA17886 [Drosophila pseudoobscura pseudoobscura] gi\|193907820, gi... - gi\|195129856\|ref\|XP_002009370.1\| GI15312 [Drosophila mojavensis], gi\|193907820\|gb\|EDW06687.1\| GI1531... gi\|195166956, gi... - gi\|195166956\|ref\|XP_002024300.1\| GL14888 [Drosophila persimilis], gi\|194107673\|gb\|EDW29716.1\| GL1488... FBpp0311818, Act... - The gene Actin 5C is referred to in FlyBase by the symbol Dmel\Act5C (CG4027, FBgn0000042). It is a ... ACT5C_ANOGA - Actin-5C OS=Anopheles gambiae GN=Act5C PE=2 SV=1 gi\|54643168, gi\|... - gi\|54643168\|gb\|EAL31912.1\| GA17886 [Drosophila pseudoobscura pseudoobscura], gi\|125981707\|ref\|XP_001... gi\|157128681, gi... - gi\|157128681\|ref\|XP_001655176.1\| actin [Aedes aegypti], gi\|157128679\|ref\|XP_001655175.1\| actin [Aede... gi\|52630919 - gi\|52630919\|gb\|AAU84923.1\| putative actin [Toxoptera citricida] ACT3B_HELAM - Actin-A3b, cytoplasmic OS=Helicoverpa armigera GN=actA3b PE=2 SV=1 gi\|118780938, gi... - gi\|58381342\|ref\|XP_311177.2\| ENSANGP00000019055 [Anopheles gambiae str. PEST], gi\|55242984\|gb\|EAA068...	0.0	[1..444]	[1..375]
gi\|80751139, gi\|... - gi\|80751139\|ref\|NP_001032193.1\| hypothetical protein LOC641320 [Danio rerio], gi\|78070743\|gb\|AAI0784... ACT4_ARTSX - Actin, clone 403 OS=Artemia sp. PE=2 SV=1	0.0	[1..444]	[1..375]
gi\|19526211, gi\|... - gi\|19526213\|gb\|AAL89658.1\|AF286060_1 cytoplasmic actin A3a1 [Helicoverpa zea], gi\|19526211\|gb\|AAL896... gi\|28070937 - gi\|28070937\|emb\|CAD58315.1\| non-muscle actin [Manduca sexta] ACT3A_HELAM - Actin, cytoplasmic A3a OS=Helicoverpa armigera GN=actA3a PE=2 SV=1 gi\|154091302 - gi\|154091302\|gb\|ABS57458.1\| actin 1 [Heliconius erato]	0.0	[1..444]	[1..375]
gi\|77955978 - gi\|77955978\|gb\|ABB05541.1\| beta actin [Fenneropenaeus chinensis] gi\|68138000 - gi\|68138000\|gb\|AAY85815.1\| beta-actin [Callinectes sapidus] gi\|51472040 - gi\|51472040\|gb\|AAU04441.1\| beta-actin [Macrobrachium rosenbergii] gi\|13647003 - gi\|13647003\|dbj\|BAB41102.1\| actin [Marsupenaeus japonicus] gi\|10304437 - gi\|10304437\|gb\|AAG16253.1\|AF300705_1 beta-actin [Litopenaeus vannamei] gi\|34576243 - gi\|34576243\|emb\|CAE46725.1\| beta actin [Homarus gammarus]	0.0	[1..444]	[1..375]
ACT5_XENLA - Actin, cytoplasmic type 5 OS=Xenopus laevis PE=3 SV=1	0.0	[1..444]	[1..375]
ACT2_SCHMA - Actin-2 OS=Schistosoma mansoni PE=2 SV=1 gi\|6979994, gi\|1... - gi\|6979994\|gb\|AAF34686.1\| actin [Schistosoma japonicum], gi\|189503078\|gb\|ACE06920.1\| unknown [Schist... gi\|186462275 - gi\|186462275\|gb\|ACC78609.1\| actin [Schistosoma bovis]	0.0	[1..444]	[1..375]
ACT2_ONCVO - Actin-2 OS=Onchocerca volvulus GN=act-2b PE=3 SV=1 gi\|158594157, gi... - gi\|170587336\|ref\|XP_001898433.1\| actin 2 [Brugia malayi], gi\|158594157\|gb\|EDP32745.1\| actin 2, putat...	0.0	[1..444]	[1..375]
gi\|3860544 - gi\|3860544\|emb\|CAA10111.1\| actin [Plectus acuminatus]	0.0	[1..444]	[1..375]

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Predicted Domain #1

Region A:
Residues: [1-182]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSYLNNPAVV MDNGTGLTKL GFAGNDSPSW VFPTAIATAA PSNTKKSSGV GAPSAVSNEA  60
   61 SYFGNSTSAT NFNGATGGLL SNNLSGKRGT EDLDFYIGNE ALVASQGPSY SLSYPIRHGQ 120
  121 VENWDHMERF WENSIFKYLR TEPEDHFFLL TEPPLNPPEN REQVAEIFFE SFNCAGLYIA 180
  181 VQ

[Run NCBI BLAST on this sequence.]

Region B:
Residues: [409-449]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VWFGGSLLAQ TAEFKGYCHT KKDYEEYGPE IVRNFSLFNM V

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	1682.218487
Match:	1yagA_
Description:	Actin
Matching Structure (courtesy of the PDB):

Predicted Domain #2

Region A:
Residues: [183-408]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 AVLALAASWT SSKVTDRSLT GTVIDSGDGV THVIPVAEGY VIGSAIKNIP IAGRDITLFI  60
   61 QSLLRERGEA DTSLRTAEKI KQEYCYVCPD IVKEFNKFDK DPSKFAQFVV ENQEKTRRKV 120
  121 VDIGYERFLA PEIFFNPEIA SSDFLTPLPT VVDQTIQACP IDVRKGLYNN IVLSGGSTMF 180
  181 KDFGRRLQRD LKSIVNNRIA QSELLSGTKS TGVDVSVISH RKQRNA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	1682.218487
Match:	1yagA_
Description:	Actin
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits