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View Structure Prediction Details

Protein: ARP3
Organism: Saccharomyces cerevisiae
Length: 449 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ARP3.

Description E-value Query
Range
Subject
Range
gi|194130965, gi... - gi|195340496|ref|XP_002036849.1| GM12447 [Drosophila sechellia], gi|194130965|gb|EDW53008.1| GM12447...
gi|195401955, gi... - gi|195401955|ref|XP_002059576.1| GJ14747 [Drosophila virilis], gi|194147283|gb|EDW62998.1| GJ14747 [...
gi|195432731, gi... - gi|195432731|ref|XP_002064370.1| GK20124 [Drosophila willistoni], gi|194160455|gb|EDW75356.1| GK2012...
gi|195480603, gi... - gi|195480603|ref|XP_002101323.1| Act57B [Drosophila yakuba], gi|194188847|gb|EDX02431.1| Act57B [Dro...
gi|89473786, gi|... - gi|89473786|gb|ABD72705.1| putative actin [Acyrthosiphon pisum], gi|187109134|ref|NP_001119672.1| ac...
gi|195565315, gi... - gi|195565315|ref|XP_002106247.1| GD16764 [Drosophila simulans], gi|194203621|gb|EDX17197.1| GD16764 ...
ACT4_BOMMO - Actin, cytoplasmic A4 OS=Bombyx mori GN=A4 PE=2 SV=1
gi|91088365, gi|... - gi|91088369|ref|XP_976070.1| PREDICTED: similar to Actin-5C isoform 3 [Tribolium castaneum], gi|9108...
gi|220947776, gi... - gi|220957086|gb|ACL91086.1| Act5C-PA [synthetic construct], gi|220947776|gb|ACL86431.1| Act5C-PA [sy...
gi|170048737, gi... - gi|170048737|ref|XP_001870756.1| conserved hypothetical protein [Culex quinquefasciatus], gi|1678707...
gi|190648678, gi... - gi|194889160|ref|XP_001977029.1| GG18797 [Drosophila erecta], gi|190648678|gb|EDV45956.1| GG18797 [D...
gi|193892986, gi... - gi|195046398|ref|XP_001992145.1| GH24372 [Drosophila grimshawi], gi|193892986|gb|EDV91852.1| GH24372...
gi|125981707|ref... - GA17886-PA [Drosophila pseudoobscura], GA17886 [Drosophila pseudoobscura pseudoobscura]
gi|193907820, gi... - gi|195129856|ref|XP_002009370.1| GI15312 [Drosophila mojavensis], gi|193907820|gb|EDW06687.1| GI1531...
gi|195166956, gi... - gi|195166956|ref|XP_002024300.1| GL14888 [Drosophila persimilis], gi|194107673|gb|EDW29716.1| GL1488...
FBpp0311818, Act... - The gene Actin 5C is referred to in FlyBase by the symbol Dmel\Act5C (CG4027, FBgn0000042). It is a ...
ACT5C_ANOGA - Actin-5C OS=Anopheles gambiae GN=Act5C PE=2 SV=1
gi|54643168, gi|... - gi|54643168|gb|EAL31912.1| GA17886 [Drosophila pseudoobscura pseudoobscura], gi|125981707|ref|XP_001...
gi|157128681, gi... - gi|157128681|ref|XP_001655176.1| actin [Aedes aegypti], gi|157128679|ref|XP_001655175.1| actin [Aede...
gi|52630919 - gi|52630919|gb|AAU84923.1| putative actin [Toxoptera citricida]
ACT3B_HELAM - Actin-A3b, cytoplasmic OS=Helicoverpa armigera GN=actA3b PE=2 SV=1
gi|118780938, gi... - gi|58381342|ref|XP_311177.2| ENSANGP00000019055 [Anopheles gambiae str. PEST], gi|55242984|gb|EAA068...
0.0 [1..444] [1..375]
gi|80751139, gi|... - gi|80751139|ref|NP_001032193.1| hypothetical protein LOC641320 [Danio rerio], gi|78070743|gb|AAI0784...
ACT4_ARTSX - Actin, clone 403 OS=Artemia sp. PE=2 SV=1
0.0 [1..444] [1..375]
gi|19526211, gi|... - gi|19526213|gb|AAL89658.1|AF286060_1 cytoplasmic actin A3a1 [Helicoverpa zea], gi|19526211|gb|AAL896...
gi|28070937 - gi|28070937|emb|CAD58315.1| non-muscle actin [Manduca sexta]
ACT3A_HELAM - Actin, cytoplasmic A3a OS=Helicoverpa armigera GN=actA3a PE=2 SV=1
gi|154091302 - gi|154091302|gb|ABS57458.1| actin 1 [Heliconius erato]
0.0 [1..444] [1..375]
gi|77955978 - gi|77955978|gb|ABB05541.1| beta actin [Fenneropenaeus chinensis]
gi|68138000 - gi|68138000|gb|AAY85815.1| beta-actin [Callinectes sapidus]
gi|51472040 - gi|51472040|gb|AAU04441.1| beta-actin [Macrobrachium rosenbergii]
gi|13647003 - gi|13647003|dbj|BAB41102.1| actin [Marsupenaeus japonicus]
gi|10304437 - gi|10304437|gb|AAG16253.1|AF300705_1 beta-actin [Litopenaeus vannamei]
gi|34576243 - gi|34576243|emb|CAE46725.1| beta actin [Homarus gammarus]
0.0 [1..444] [1..375]
ACT5_XENLA - Actin, cytoplasmic type 5 OS=Xenopus laevis PE=3 SV=1
0.0 [1..444] [1..375]
ACT2_SCHMA - Actin-2 OS=Schistosoma mansoni PE=2 SV=1
gi|6979994, gi|1... - gi|6979994|gb|AAF34686.1| actin [Schistosoma japonicum], gi|189503078|gb|ACE06920.1| unknown [Schist...
gi|186462275 - gi|186462275|gb|ACC78609.1| actin [Schistosoma bovis]
0.0 [1..444] [1..375]
ACT2_ONCVO - Actin-2 OS=Onchocerca volvulus GN=act-2b PE=3 SV=1
gi|158594157, gi... - gi|170587336|ref|XP_001898433.1| actin 2 [Brugia malayi], gi|158594157|gb|EDP32745.1| actin 2, putat...
0.0 [1..444] [1..375]
gi|3860544 - gi|3860544|emb|CAA10111.1| actin [Plectus acuminatus]
0.0 [1..444] [1..375]

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Predicted Domain #1
Region A:
Residues: [1-182]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSYLNNPAVV MDNGTGLTKL GFAGNDSPSW VFPTAIATAA PSNTKKSSGV GAPSAVSNEA  60
   61 SYFGNSTSAT NFNGATGGLL SNNLSGKRGT EDLDFYIGNE ALVASQGPSY SLSYPIRHGQ 120
  121 VENWDHMERF WENSIFKYLR TEPEDHFFLL TEPPLNPPEN REQVAEIFFE SFNCAGLYIA 180
  181 VQ

[Run NCBI BLAST on this sequence.]

Region B:
Residues: [409-449]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VWFGGSLLAQ TAEFKGYCHT KKDYEEYGPE IVRNFSLFNM V

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 1682.218487
Match: 1yagA_
Description: Actin
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [183-408]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 AVLALAASWT SSKVTDRSLT GTVIDSGDGV THVIPVAEGY VIGSAIKNIP IAGRDITLFI  60
   61 QSLLRERGEA DTSLRTAEKI KQEYCYVCPD IVKEFNKFDK DPSKFAQFVV ENQEKTRRKV 120
  121 VDIGYERFLA PEIFFNPEIA SSDFLTPLPT VVDQTIQACP IDVRKGLYNN IVLSGGSTMF 180
  181 KDFGRRLQRD LKSIVNNRIA QSELLSGTKS TGVDVSVISH RKQRNA

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 1682.218487
Match: 1yagA_
Description: Actin
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle