YRC Public Data Repository - Protein Structure Prediction

Protein:	YJR056C
Organism:	Saccharomyces cerevisiae
Length:	236 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YJR056C.

Description	E-value	Query Range	Subject Range
YJ26_YEAST - Uncharacterized protein YJR056C OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YJR056C ... YJR056C - Putative protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to bo... gi\|190409533 - gi\|190409533\|gb\|EDV12798.1\| conserved hypothetical protein [Saccharomyces cerevisiae RM11-1a] gi\|151945124 - gi\|151945124\|gb\|EDN63375.1\| conserved protein [Saccharomyces cerevisiae YJM789]	0.0	[1..236]	[1..236]

Back

Predicted Domain #1

Region A:
Residues: [1-236]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEQMHSLESS LPPEQPPTKQ AIESLNLELS QEFKLAANAV TRLYRVANEK NSLTKHQGYL  60
   61 TCLDDILCAL DSNVTADELR AWCYKRRNDI LSNSQDKSLN PVKERERKLN KFSENQHREN 120
  121 EAHKEPFEKD SAVKYNFSFN ESNGDLSNIN ENIAPKFRLS MPPLSVEHPP RNASRIKSWK 180
  181 ARTINHGRGD TRNLNDITGL GHERERDREN THYEKKPKLD SDSEVDIRSF RQDMDL

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits