| Protein: | YJL225C |
| Organism: | Saccharomyces cerevisiae |
| Length: | 1758 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YJL225C.
| Description | E-value | Query Range |
Subject Range |
|
|
954.0 | [0..386] | [1226..515] |
|
Region A: Residues: [1-238] |
1 11 21 31 41 51
| | | | | |
1 MKVSDRRKFE KANFDEFESA LNNKNDLVHC PSITLFESIP TEVRSFYEDE KSGLIKVVKF 60
61 RTGAMDRKRS FEKVVISVMV GKNVKKFLTF VEDEPDFQGG PIPSKYLIPK KINLMVYTLF 120
121 QVHTLKFNRK DYDTLSLFYL NRGYYNELSF RVLERCHEIA SARPNDSSTM RTFTDFVSGA 180
181 PIVRSLQKST IRKYGYNLAP YMFLLLHVDE LSIFSAYQAS LPGEKKVDTE RLKRDLCP
|
| Detection Method: |  |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [239-449] |
1 11 21 31 41 51
| | | | | |
1 RKPIEIKYFS QICNDMMNKK DRLGDILHII LRACALNFGA GPRGGAGDEE DRSITNEEPI 60
61 IPSVDEHGLK VCKLRSPNTP RRLRKTLDAV KALLVSSCAC TARDLDIFDD NNGVAMWKWI 120
121 KILYHEVAQE TTLKDSYRIT LVPSSDGISL LAFAGPQRNV YVDDTTRRIQ LYTDYNKNGS 180
181 SEPRLKTLDG LTSDYVFYFV TVLRQMQICA L
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [450-556] |
1 11 21 31 41 51
| | | | | |
1 GNSYDAFNHD PWMDVVGFED PNQVTNRDIS RIVLYSYMFL NTAKGCLVEY ATFRQYMREL 60
61 PKNAPQKLNF REMRQGLIAL GRHCVGSRFE TDLYESATSE LMANHSV
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.947 | a.78.1 | Fatty acid responsive transcription factor FadR, C-terminal domain |
|
Region A: Residues: [557-1094] |
1 11 21 31 41 51
| | | | | |
1 QTGRNIYGVD SFSLTSVSGT TATLLQERAS ERWIQWLGLE SDYHCSFSST RNAEDVVAGE 60
61 AASSNHHQKI SRVTRKRPRE PKSTNDILVA GQKLFGSSFE FRDLHQLRLC YEIYMADTPS 120
121 VAVQAPPGYG KTELFHLPLI ALASKGDVEY VSFLFVPYTV LLANCMIRLG RRGCLNVAPV 180
181 RNFIEEGYDG VTDLYVGIYD DLASTNFTDR IAAWENIVEC TFRTNNVKLG YLIVDEFHNF 240
241 ETEVYRQSQF GGITNLDFDA FEKAIFLSGT APEAVADAAL QRIGLTGLAK KSMDINELKR 300
301 SEDLSRGLSS YPTRMFNLIK EKSEVPLGHV HKIRKKVESQ PEEALKLLLA LFESEPESKA 360
361 IVVASTTNEV EELACSWRKY FRVVWIHGKL GAAEKVSRTK EFVTDGSMQV LIGTKLVTEG 420
421 IDIKQLMMVI MLDNRLNIIE LIQGVGRLRD GGLCYLLSRK NSWAARNRKG ELPPIKEGCI 480
481 TEQVREFYGL ESKKGKKGQH VGCCGSRTDL SADTVELIER MDRLAEKQAT ASMSIVAL
|
| Detection Method: | |
| Confidence: | 155.228787 |
| Match: | 1fuuA |
| Description: | Initiation factor 4a |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [1095-1439] |
1 11 21 31 41 51
| | | | | |
1 PSSFQESNSS DRYRKYCSSD EDSNTCIHGS ANASTNASTN AITTASTNVR TNATTNASTN 60
61 ATTNASTNAS TNATTNASTN ATTNSSTNAT TTASTNVRTS ATTTASINVR TSATTTESTN 120
121 SSTNATTTES TNSSTNATTT ESTNSNTSAT TTASINVRTS ATTTESTNSS TSATTTASIN 180
181 VRTSATTTKS INSSTNATTT ESTNSNTNAT TTESTNSSTN ATTTESTNSS TNATTTESTN 240
241 SNTSAATTES TNSNTSATTT ESTNASAKED ANKDGNAEDN RFHPVTDINK ESYKRKGSQM 300
301 VLLERKKLKA QFPNTSENMN VLQFLGFRSD EIKHLFLYGI DIYFC
|
| Detection Method: | |
| Confidence: | 14.41 |
| Match: | |
| Description: | No description for 1m2vB was found. |
|
Region A: Residues: [1440-1503] |
1 11 21 31 41 51
| | | | | |
1 PEGVFTQYGL CKGCQKMFEL CVCWAGQKVS YRRIAWEALA VERMLRNDEE YKEYLEDIEP 60
61 YHGD
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.937 | a.60.1 | SAM/Pointed domain |
|
Region A: Residues: [1504-1758] |
1 11 21 31 41 51
| | | | | |
1 PVGYLKYFSV KRREIYSQIQ RNYAWYLAIT RRRETISVLD STRGKQGSQV FRMSGRQIKE 60
61 LYFKVWSNLR ESKTEVLQYF LNWDEKKCQE EWEAKDDTVV VEALEKGGVF QRLRSMTSAG 120
121 LQGPQYVKLQ FSRHHRQLRS RYELSLGMHL RDQIALGVTP SKVPHWTAFL SMLIGLFYNK 180
181 TFRQKLEYLL EQISEVWLLP HWLDLANVEV LAADDTRVPL YMLMVAVHKE LDSDDVPDGR 240
241 FDILLCRDSS REVGE
|
| Detection Method: | |
| Confidence: | 7.54 |
| Match: | |
| Description: | No description for 1itwA was found. |
