YRC Public Data Repository - Protein Structure Prediction

Protein:	ELO1
Organism:	Saccharomyces cerevisiae
Length:	310 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ELO1.

Description	E-value	Query Range	Subject Range
ELO1 - Elongase I, medium-chain acyl elongase, catalyzes carboxy-terminal elongation of unsaturated C12-C16... ELO1_YEAST - Elongation of fatty acids protein 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=ELO1...	2.0E-80	[1..310]	[1..310]
SPAC1B2.03c - GNS1 /SUR4 family protein ELOH1_SCHPO - Putative elongation of fatty acids protein 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) ...	2.0E-64	[16..306]	[12..297]
ELOVL4 - elongation of very long chain fatty acids (FEN1/Elo2, SUR4/Elo3, yeast)-like 4	4.0E-58	[34..308]	[20..285]
ELO4_MOUSE, ELOV... - Elongation of very long chain fatty acids protein 4 OS=Mus musculus GN=Elovl4 PE=2 SV=1, (Q9EQC4) El...	2.0E-57	[33..308]	[19..285]
ELOV4_MACMU - Elongation of very long chain fatty acids protein 4 OS=Macaca mulatta GN=ELOVL4 PE=3 SV=1 ELOV4_MACFA - Elongation of very long chain fatty acids protein 4 OS=Macaca fascicularis GN=ELOVL4 PE=2 SV=1	2.0E-57	[34..308]	[20..285]
gi\|8050874 - gi\|8050874\|gb\|AAF71789.1\|AF268031_1 long chain fatty acid elongation enzyme [Mortierella alpina]	3.0E-56	[20..305]	[13..293]
ELOV5_RAT - Elongation of very long chain fatty acids protein 5 OS=Rattus norvegicus GN=Elovl5 PE=1 SV=1	3.0E-56	[31..304]	[2..263]

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Predicted Domain #1

Region A:
Residues: [1-310]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVSDWKNFCL EKASRFRPTI DRPFFNIYLW DYFNRAVGWA TAGRFQPKDF EFTVGKQPLS  60
   61 EPRPVLLFIA MYYVVIFGGR SLVKSCKPLK LRFISQVHNL MLTSVSFLWL ILMVEQMLPI 120
  121 VYRHGLYFAV CNVESWTQPM ETLYYLNYMT KFVEFADTVL MVLKHRKLTF LHTYHHGATA 180
  181 LLCYNQLVGY TAVTWVPVTL NLAVHVLMYW YYFLSASGIR VWWKAWVTRL QIVQFMLDLI 240
  241 VVYYVLYQKI VAAYFKNACT PQCEDCLGSM TAIAAGAAIL TSYLFLFISF YIEVYKRGSA 300
  301 SGKKKINKNN

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	219.823909
Match:	PF01151
Description:	GNS1/SUR4 family

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits